Non-Coding RNA Search

Ss1.1-raor023_a14.5

Sequence:


               
               GGATCATCTTAACGACTTAAAAGTCTTGATATTCTAGAATTTGTACTCATTTTTACTTTA
AAAGCCACGGGGGACAGTTCTATATCTTAAAGGAAAATATCTAAAGCGTTTTAAAGTATT
GAGATTGTCTTGCCTATGTGCTTACTCTACAGCTTTGATTGTCTTGTCTCTTGTCAGTAG
ACCTTCAGTATACAGTAGGTGGGATATGTGAGGCAAGTTGGTCAGAACCAGCATCTGTCC
AGCTGCTGTAAGTATGTTGTGATTCATTTACAATCTGTTCTATCCCAGCCGTGGGCAGAG
GTGCTGTATCTGAGGGATGTGCTATAATTTGATTTACGTACACTAGAGCACACAGTAGAA
AAATCTTAGCTTCATTAGTAATATGACACATGTATATAGTGAGATGTCCTTATTGTGTGC
TTTGCATATTTTGTAAATATTTTGCACGTCATTATTTTTCTTTTTTGTTTAAGCAGTGTT
TGGCCTGGAAGAGTGATATGCTTGCTGCTTAATCAAAGGATTAAAGAGTTAAAGATGTCT
ATGTCTTCTATTTTCACATAATTTCATGTTGTATGAAAAATTTAGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATCATCTTAACGACTTAAAAGTCTTGATATTCTAGAATTTGTACTCATTTTTACTTTA
AAAGCCACGGGGGACAGTTCTATATCTTAAAGGAAAATATCTAAAGCGTTTTAAAGTATT
GAGATTGTCTTGCCTATGTGCTTACTCTACAGCTTTGATTGTCTTGTCTCTTGTCAGTAG
ACCTTCAGTATACAGTAGGTGGGATATGTGAGGCAAGTTGGTCAGAACCAGCATCTGTCC
AGCTGCTGTAAGTATGTTGTGATTCATTTACAATCTGTTCTATCCCAGCCGTGGGCAGAG
GTGCTGTATCTGAGGGATGTGCTATAATTTGATTTACGTACACTAGAGCACACAGTAGAA
AAATCTTAGCTTCATTAGTAATATGACACATGTATATAGTGAGATGTCCTTATTGTGTGC
TTTGCATATTTTGTAAATATTTTGCACGTCATTATTTTTCTTTTTTGTTTAAGCAGTGTT
TGGCCTGGAAGAGTGATATGCTTGCTGCTTAATCAAAGGATTAAAGAGTTAAAGATGTCT
ATGTCTTCTATTTTCACATAATTTCATGTTGTATGAAAAATTTAGGAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               326-445, + strand, RNAz p=0.955463

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               326-445, + strand, RNAz p=0.955463

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               326-445, UMC-pd3ov3-003-c03 Oviduct gilt D3 of estrous cycle pd3ov Sus 
(gb|CO990437.1|), blast E-value=0, identity=100% 
               

               
               327-445, LIB4216-031-R1-K1-A2 LIB4216 Canis familiaris cDNA clone 
(gb|DN422791.1|), blast E-value=0, identity=98.32% 
               

               
               327-445, LIB4216-031-R1-K1-E2 LIB4216 Canis familiaris cDNA clone 
(gb|DN422832.1|), blast E-value=0, identity=97.48% 
               

               
               327-445, GL-Cf-3450 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue 
(gb|DN746658.1|), blast E-value=0, identity=98.32% 
               

               
               327-445, 1433067 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DR115553.1|), 
blast E-value=0, identity=96.64% 
               

               
               326-445, POSM0605008_N15F porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV898447.1|), blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               326-445, UMC-pd3ov3-003-c03 Oviduct gilt D3 of estrous cycle pd3ov Sus 
(gb|CO990437.1|), blast E-value=0, identity=100% 
               

               
               327-445, LIB4216-031-R1-K1-A2 LIB4216 Canis familiaris cDNA clone 
(gb|DN422791.1|), blast E-value=0, identity=98.32% 
               

               
               327-445, LIB4216-031-R1-K1-E2 LIB4216 Canis familiaris cDNA clone 
(gb|DN422832.1|), blast E-value=0, identity=97.48% 
               

               
               327-445, GL-Cf-3450 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue 
(gb|DN746658.1|), blast E-value=0, identity=98.32% 
               

               
               327-445, 1433067 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DR115553.1|), 
blast E-value=0, identity=96.64% 
               

               
               326-445, POSM0605008_N15F porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV898447.1|), blast E-value=0, identity=100%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_018254, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_018254, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-576, gnl|bosTau2|chr16 (54974177-54974744)
               

               
               1-576, gnl|Hg17|chr1 (207877192-207877793)
               

               
               1-576, gnl|Mm7|chr1 (191652132-191651577)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr16 (54974177-54974744)
               

               
               1-576, gnl|Hg17|chr1 (207877192-207877793)
               

               
               1-576, gnl|Mm7|chr1 (191652132-191651577)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cte (0.29274)
               

               
               aor (0.195274)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               aor (0.195274)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	326-445, UMC-pd3ov3-003-c03 Oviduct gilt D3 of estrous cycle pd3ov Sus (gb\|CO990437.1\|), blast E-value=0, identity=100%
	327-445, LIB4216-031-R1-K1-A2 LIB4216 Canis familiaris cDNA clone (gb\|DN422791.1\|), blast E-value=0, identity=98.32%
	327-445, LIB4216-031-R1-K1-E2 LIB4216 Canis familiaris cDNA clone (gb\|DN422832.1\|), blast E-value=0, identity=97.48%
	327-445, GL-Cf-3450 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue (gb\|DN746658.1\|), blast E-value=0, identity=98.32%
	327-445, 1433067 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DR115553.1\|), blast E-value=0, identity=96.64%
	326-445, POSM0605008_N15F porcine skeletal muscle cDNA library (PoSM) Sus (gb\|DV898447.1\|), blast E-value=0, identity=100%

	1-576, gnl\|bosTau2\|chr16 (54974177-54974744)
	1-576, gnl\|Hg17\|chr1 (207877192-207877793)
	1-576, gnl\|Mm7\|chr1 (191652132-191651577)

	cte (0.29274)
	aor (0.195274)
	isp (0.150376)
	ski (0.146735)
	ova (0.129132)
	tra (0.123092)
	ebs (0.118301)
	spc (0.113366)