Non-Coding RNA Search

Ss1.1-raor026_p5.5.5

Sequence:


               
               GTGTTCTGTGTATATGTGCTATGGATATTAAAATAGTTCCATGTTCCTAATATTTGCAAA
CTCTAGTTGCAAGGGGAAAGGCAGCTTGTGATCTCTCAAGTTAAAAAATACACAGTGGAT
TGTCATCCAGTTCCATGAGAAAATTGGCAGAGGTTGTCGAGTTGCGGTAGTAAGGGGATG
AATGTTTTAATGGCCTTGAGTTTGGTCACTGCAAAGGATAGTAGACAGCTCAAGACAGGA
AACTGCAGTTAACATATAAAACTCTCACCGTTTCAGGTTACACTTTAAAACCAACAGCTC
TTACCCTAACAGCCTGGCTCTTTCTGGTAATCCATCAGAAGCTTTATGAAAGTTCTCGTT
GTTTCAGAGGAAAGATTCTGTTTATGGAAGCAGGGTGTGGGGCAGCTCCGTTGAAACAGA
TTTTCATACTAATTTTTAAATCAGTGTAAATCTAGGCAGATCTAGATCATAACTTACGTA
TTGTGTCAGGATGGGACAGGAAGCAGGTCCCATGCTTTGAGGCACCGGATGTGCTGGAAT
GGGATTCATACTAGAGTCAACGGGACAAGATTGGCATTCTTAAGACCCGTGAGCCCCCAG
CTTTATTTCCTCCCTGCAGGTTTTACCTTTACATTAACAAATACCTAAGTTTTAAAAGGC
CATTTTTTCCTGAGGCTGATTTCTGATTAAATAATCAAAATATTTTCTGCTGTTTTTGCC
AGGAGTCACAAAGATGATTAAAGGGTTGGAAAAAAAGATCTATGATGAAAAAGTAAAGGA
ACTGGGATTATTCAGCGTGGAGAAGAGAAGACTGAGGGGCAAACCATTGCTGGTTTTCAA
GTATATGAAGGGTGGGTACAGAGAGGACGGCGACCAGCTGTTCTCCATATGCACTAAGAA
TAGAACAAGAGGAAACAGGCTCAGACTGGAGTGTGAGGGAACATTTCCTGGCAGGGACAG
TTGTTAAATTAGAATCCTTTGTTTAAAAATGAAATTTTTTTGAGGCTTTAAAAAAATGTG
ATCATTTTTCTATTTAAGATGGTTAACGATGTTCTTACCTCAAGGTAGCATAACAGATTA
CAGAATCTCCCCAAAGATGTTTTGCTCCTATTCCTATATCATGAAAATCTCCAGAACTAG
GTAACTTGGACTAGACTAAGGTCTAATTCAGGTTATTTCCCATGCGGCCTCCTAATGGAG
AGCAATCAAAATCTACCAAATGCTGAGCTCACTAAAATGTCTCCCCCTTTATGGCAAACC
TAGCAGTATTAAAAAGAAAAAAAAGAAAGACAAAATTAAAAATCTCTTTATTGCAAAGAG
TATGATGGATAGATATTTTAGTATCTCAATAAGATCCTAATGTGTAGTATATGTATTTTT
TTTTGCTTGGTAAAGGTGTAACCCTTTCAGTTGCGAAAGGGATGATATTTCAGATTTTTA
AAGAGACCCTATCAAAGAACACAGTTTAGAGAGATTTTTATTTGGTTCATTCCCTCTGCA
ATGTGTGTTGACAGCTTAACTTGGCTACTGAAAAAGAGGGCCATGCCTACCACCACTGCC
AGGACCTTCCCTTCACCTAATGATACAGGTTTCTCTGAGTGATTGGAATCTCCCAAATGG
TATTATTTTTGGAACAATAGATACAATAGGATGTCTTTCATCATTTAACTTGGTGGAGGC
AGGGCCAGAGGGGGACTATAAATCAGTAAGCCTTTGAGTAAGGGCCAGAAAATATGGCCT
TAGATCCATTTCTAATGATTCATTTCCTTTTTGGTCATATTAACTGCACAACCGAAGATG
AAAGGGGAAAACAGAAAATTTCACTTTTAGGTGCCAATAATACATTGCACTACACTGATG
GAAGAAGTTATCCAAAGTACTGTATAACATCTTGTTTATTATTTAATGTTTTCTAACGTG
AAAAATGTTAGTGGTTTTCCAAACAGCCAAATAAAAAGAATTTCTTTGTAAATTAAAACA
CTTAATACTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTTCTGTGTATATGTGCTATGGATATTAAAATAGTTCCATGTTCCTAATATTTGCAAA
CTCTAGTTGCAAGGGGAAAGGCAGCTTGTGATCTCTCAAGTTAAAAAATACACAGTGGAT
TGTCATCCAGTTCCATGAGAAAATTGGCAGAGGTTGTCGAGTTGCGGTAGTAAGGGGATG
AATGTTTTAATGGCCTTGAGTTTGGTCACTGCAAAGGATAGTAGACAGCTCAAGACAGGA
AACTGCAGTTAACATATAAAACTCTCACCGTTTCAGGTTACACTTTAAAACCAACAGCTC
TTACCCTAACAGCCTGGCTCTTTCTGGTAATCCATCAGAAGCTTTATGAAAGTTCTCGTT
GTTTCAGAGGAAAGATTCTGTTTATGGAAGCAGGGTGTGGGGCAGCTCCGTTGAAACAGA
TTTTCATACTAATTTTTAAATCAGTGTAAATCTAGGCAGATCTAGATCATAACTTACGTA
TTGTGTCAGGATGGGACAGGAAGCAGGTCCCATGCTTTGAGGCACCGGATGTGCTGGAAT
GGGATTCATACTAGAGTCAACGGGACAAGATTGGCATTCTTAAGACCCGTGAGCCCCCAG
CTTTATTTCCTCCCTGCAGGTTTTACCTTTACATTAACAAATACCTAAGTTTTAAAAGGC
CATTTTTTCCTGAGGCTGATTTCTGATTAAATAATCAAAATATTTTCTGCTGTTTTTGCC
AGGAGTCACAAAGATGATTAAAGGGTTGGAAAAAAAGATCTATGATGAAAAAGTAAAGGA
ACTGGGATTATTCAGCGTGGAGAAGAGAAGACTGAGGGGCAAACCATTGCTGGTTTTCAA
GTATATGAAGGGTGGGTACAGAGAGGACGGCGACCAGCTGTTCTCCATATGCACTAAGAA
TAGAACAAGAGGAAACAGGCTCAGACTGGAGTGTGAGGGAACATTTCCTGGCAGGGACAG
TTGTTAAATTAGAATCCTTTGTTTAAAAATGAAATTTTTTTGAGGCTTTAAAAAAATGTG
ATCATTTTTCTATTTAAGATGGTTAACGATGTTCTTACCTCAAGGTAGCATAACAGATTA
CAGAATCTCCCCAAAGATGTTTTGCTCCTATTCCTATATCATGAAAATCTCCAGAACTAG
GTAACTTGGACTAGACTAAGGTCTAATTCAGGTTATTTCCCATGCGGCCTCCTAATGGAG
AGCAATCAAAATCTACCAAATGCTGAGCTCACTAAAATGTCTCCCCCTTTATGGCAAACC
TAGCAGTATTAAAAAGAAAAAAAAGAAAGACAAAATTAAAAATCTCTTTATTGCAAAGAG
TATGATGGATAGATATTTTAGTATCTCAATAAGATCCTAATGTGTAGTATATGTATTTTT
TTTTGCTTGGTAAAGGTGTAACCCTTTCAGTTGCGAAAGGGATGATATTTCAGATTTTTA
AAGAGACCCTATCAAAGAACACAGTTTAGAGAGATTTTTATTTGGTTCATTCCCTCTGCA
ATGTGTGTTGACAGCTTAACTTGGCTACTGAAAAAGAGGGCCATGCCTACCACCACTGCC
AGGACCTTCCCTTCACCTAATGATACAGGTTTCTCTGAGTGATTGGAATCTCCCAAATGG
TATTATTTTTGGAACAATAGATACAATAGGATGTCTTTCATCATTTAACTTGGTGGAGGC
AGGGCCAGAGGGGGACTATAAATCAGTAAGCCTTTGAGTAAGGGCCAGAAAATATGGCCT
TAGATCCATTTCTAATGATTCATTTCCTTTTTGGTCATATTAACTGCACAACCGAAGATG
AAAGGGGAAAACAGAAAATTTCACTTTTAGGTGCCAATAATACATTGCACTACACTGATG
GAAGAAGTTATCCAAAGTACTGTATAACATCTTGTTTATTATTTAATGTTTTCTAACGTG
AAAAATGTTAGTGGTTTTCCAAACAGCCAAATAAAAAGAATTTCTTTGTAAATTAAAACA
CTTAATACTAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1990, gnl|bosTau2|chr29 (40440203-40442271)
               

               
               1-1990, gnl|Hg17|chr4 (107248392-107250432)
               

               
               1-1990, gnl|Mm7|chr3 (132680754-132678677)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1990, gnl|bosTau2|chr29 (40440203-40442271)
               

               
               1-1990, gnl|Hg17|chr4 (107248392-107250432)
               

               
               1-1990, gnl|Mm7|chr3 (132680754-132678677)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               aor (1.56219)
               

               
               liv (0.731422)
               

               
               gul (0.355177)
               

               
               cty (0.31224)
               

               
               ova (0.258264)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (1.56219)
               

               
               liv (0.731422)
               

               
               gul (0.355177)
               

               
               cty (0.31224)
               

               
               ova (0.258264)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)

	1-1990, gnl\|bosTau2\|chr29 (40440203-40442271)
	1-1990, gnl\|Hg17\|chr4 (107248392-107250432)
	1-1990, gnl\|Mm7\|chr3 (132680754-132678677)

	aor (1.56219)
	liv (0.731422)
	gul (0.355177)
	cty (0.31224)
	ova (0.258264)
	ece (0.229305)
	fbs (0.175346)
	nco (0.161734)
	fco (0.157208)
	lnt (0.142308)
	kid (0.129735)
	sug (0.127291)
	clu (0.119646)
	pgl (0.118483)