Non-Coding RNA Search

Ss1.1-raor029_h22.5

Sequence:


               
               AATGTGGAAAACCCTTTACCCAGAAGGGAAACTTGCTTTCTCATCAGAAACATCATACTG
GAGAGAAACCATATGAATGTGGGAAAGCTTCTGTTCAGATGCCAAGTTTCATTAAACAGC
AGAGAAATCATATTGGAAACAAACCCTATGCATGTAAGGAATGTGGCAAAGCTTTCAGTG
GCAAATCATATCTCACTGAGCATGAGAGAATTCATACAGGAGAGAAACCGTTTGAATGTA
ATCAGTGTGGAAGAGCCTTCAGCCAGAAGCAATACCTTGTTAAACATCAGAATATACATA
GTGGAAAGAAACCCTTTAAATGTAATGAGTGTGGAAAAGCCTTTAGCCAGAAGGAAAACC
TCATTATCCATCAAAGAATACATACTGGAGAGAAACCTTATGAATGTAAAGGGTGTGGGA
AAGCTTTCATTCAGAAGTCAAGCCTCATTAGACACCAGAGAAGTCATACAGGAGAAAAAC
CATATATATGTAAGGAATGTGGGAAAGCCTTCAGTGGCAAATCAAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGTGGAAAACCCTTTACCCAGAAGGGAAACTTGCTTTCTCATCAGAAACATCATACTG
GAGAGAAACCATATGAATGTGGGAAAGCTTCTGTTCAGATGCCAAGTTTCATTAAACAGC
AGAGAAATCATATTGGAAACAAACCCTATGCATGTAAGGAATGTGGCAAAGCTTTCAGTG
GCAAATCATATCTCACTGAGCATGAGAGAATTCATACAGGAGAGAAACCGTTTGAATGTA
ATCAGTGTGGAAGAGCCTTCAGCCAGAAGCAATACCTTGTTAAACATCAGAATATACATA
GTGGAAAGAAACCCTTTAAATGTAATGAGTGTGGAAAAGCCTTTAGCCAGAAGGAAAACC
TCATTATCCATCAAAGAATACATACTGGAGAGAAACCTTATGAATGTAAAGGGTGTGGGA
AAGCTTTCATTCAGAAGTCAAGCCTCATTAGACACCAGAGAAGTCATACAGGAGAAAAAC
CATATATATGTAAGGAATGTGGGAAAGCCTTCAGTGGCAAATCAAATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61812364|ref|XP_587639.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61812364|ref|XP_587639.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               74-191, + strand, RNAz p=0.839473

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               74-191, + strand, RNAz p=0.839473

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-516, gnl|bosTau2|chr10 (8996740-8996216)
               

               
               1-516, gnl|Hg17|chr19 (42818545-42817937)
               

               
               1-516, gnl|Mm7|chr2 (127310171-127309672)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-516, gnl|bosTau2|chr10 (8996740-8996216)
               

               
               1-516, gnl|Hg17|chr19 (42818545-42817937)
               

               
               1-516, gnl|Mm7|chr2 (127310171-127309672)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               aor (0.195274)
               

               
               lyg (0.133103)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               lyg (0.133103)

	1-516, gnl\|bosTau2\|chr10 (8996740-8996216)
	1-516, gnl\|Hg17\|chr19 (42818545-42817937)
	1-516, gnl\|Mm7\|chr2 (127310171-127309672)