Non-Coding RNA Search

Ss1.1-raor029_n16.5

Sequence:


               
               CTCCATCACACTGTGCTTCTTGCTCACCTCTGGCCTGGCAGATACTGTACAGCTTTCACA
TGCAAATCTGCCTTTTCAAACTGTCTTGCAAAGACAAATGCCGAGACTTCCAGCAACCAA
ACTGCTCTCTCAACTGAATGAAGCAACCAAAACTGCTCTCTCAACTGAATGAAGGTGGCA
CAGCAATTTCACTCTGAATTACTGTGTCAGATGCTTTTTTGTACCTCAGATTAAAAATAT
TGCTGAAATCAGACGCCCACACGTTTCATGACTTTCTTCTGAAATAGCACACTGTACTCT
GAAACACAAAAAGTTATTTGGAGTGTTTTCTTAGAAAAGTGACTGAAGCCAGATCTACAG
AGCTTTTCTACTGAGATGGTTAGAAACAACGTATTTTGTAAGAGAATTTCCCTCAAGTAC
ATGTCTCTAATTCCAGATTAGCCCAGACCTCAGCTGCACCTCCTCTTCCATAGTTTTTAT
CTGAGTTTGCTTTGTGAGTTCACTGTGAGGGGAATTTAACCTCTTTTGCCAAAGAGGAAA
GTGTTTTGTTTGTTTTTAATTGAAAATGTGGACCAAAAGTCCTTTCCCTAAAAAAATGTA
TTATAATCCTATTTGTACGACTGTGACTTTCTGTGAAACACACAAATTTTAAAATACTGA
GGTGCTGGCAGGTCACGGCAGACTATCTGTGGTTATTGTGGAAGATAAACCATTTACCTT
GTGAGTTTACCTGGTTTTCTATGCATACTAATTGTAATAAATTATGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCATCACACTGTGCTTCTTGCTCACCTCTGGCCTGGCAGATACTGTACAGCTTTCACA
TGCAAATCTGCCTTTTCAAACTGTCTTGCAAAGACAAATGCCGAGACTTCCAGCAACCAA
ACTGCTCTCTCAACTGAATGAAGCAACCAAAACTGCTCTCTCAACTGAATGAAGGTGGCA
CAGCAATTTCACTCTGAATTACTGTGTCAGATGCTTTTTTGTACCTCAGATTAAAAATAT
TGCTGAAATCAGACGCCCACACGTTTCATGACTTTCTTCTGAAATAGCACACTGTACTCT
GAAACACAAAAAGTTATTTGGAGTGTTTTCTTAGAAAAGTGACTGAAGCCAGATCTACAG
AGCTTTTCTACTGAGATGGTTAGAAACAACGTATTTTGTAAGAGAATTTCCCTCAAGTAC
ATGTCTCTAATTCCAGATTAGCCCAGACCTCAGCTGCACCTCCTCTTCCATAGTTTTTAT
CTGAGTTTGCTTTGTGAGTTCACTGTGAGGGGAATTTAACCTCTTTTGCCAAAGAGGAAA
GTGTTTTGTTTGTTTTTAATTGAAAATGTGGACCAAAAGTCCTTTCCCTAAAAAAATGTA
TTATAATCCTATTTGTACGACTGTGACTTTCTGTGAAACACACAAATTTTAAAATACTGA
GGTGCTGGCAGGTCACGGCAGACTATCTGTGGTTATTGTGGAAGATAAACCATTTACCTT
GTGAGTTTACCTGGTTTTCTATGCATACTAATTGTAATAAATTATGCA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               318-519, gnl|bosTau2|chr13 (1564925-1564718)
               

               
               318-519, gnl|Hg17|chr6 (117977182-117977438)
               


               
               559-766, gnl|bosTau2|chr13 (1564723-1564521)
               

               
               559-766, gnl|Hg17|chr6 (117977433-117977643)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               318-519, gnl|bosTau2|chr13 (1564925-1564718)
               

               
               318-519, gnl|Hg17|chr6 (117977182-117977438)
               


               
               559-766, gnl|bosTau2|chr13 (1564723-1564521)
               

               
               559-766, gnl|Hg17|chr6 (117977433-117977643)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               aor (0.390549)
               

               
               sin (0.349895)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               spl (0.143184)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.390549)
               

               
               sin (0.349895)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               spl (0.143184)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	318-519, gnl\|bosTau2\|chr13 (1564925-1564718)
	318-519, gnl\|Hg17\|chr6 (117977182-117977438)

	559-766, gnl\|bosTau2\|chr13 (1564723-1564521)
	559-766, gnl\|Hg17\|chr6 (117977433-117977643)

	aor (0.390549)
	sin (0.349895)
	rec (0.17307)
	nco (0.161734)
	spl (0.143184)
	nbm (0.0993246)
	jej (0.0989218)
	eje (0.0988338)