Non-Coding RNA Search

Ss1.1-raor030_f16.5

Sequence:


               
               CGGAGCTGCCGTGCGGAGCCGAGCGCAGAGCCCCTCACCCGCGCAATCCTCCCCGCGCCT
GGCATCCCGTCTCTCCTGCAGCCCCGCCGCTCTCCTCCCGGCCCCGGAGCCTCACCGAGC
GCAGAGAGCGGGCCCGGGAGAAGCTCGGGCCCCGGCCGCCTCGTGCTTCTCCTGCTCGGC
TCGGCTCCCTCCGCCCCCCGGGGGTCGCGCGCCCACGATGCCGCAGGGCCCCGGCTCGCT
GCTGCTGCTAGTCCTCGCCTCGCACTGCTGCTTGGGTTCGGCGCGCGGGCTCTTCTTCGG
CCAGCCCGACTTCTCCTACAAGCGCAGCAACTGCAAGCCCATCCCGGCCAACCTGCAGCT
TTGCCACGGCATAGAGTACCAGAACATGCGGCTGCCCAACCTGCTGGGCCACGAGACCAT
GAAGGAGGTGCTGGAGCAGGCGGGCGCCTGGATCCCTCTGGTCATGAAGCAGTGCCACCC
GGACACCAAGAAGTTCCTGTGCTCGCTCTTCGCCCCTGTCTGCCTCGATGACCTGGACGA
AACCATCCAGCCGTGCCATTCGCTCTGCGTGCAGGTGAAGGACCGCTGCGCTCCGGTTAT
GTCCGCGTTCGGCTTCCCCTGGCCCGACATGCTGGAGTGCGACCGTTTCCCCCAGGACAA
CGACCTCTGCATCCCCCTCGCTAGCAGCGACCACCTCCTGCCGGCCACGGAGGAAGCTCC
AAAGGTATGTGAAGCCTGCAAAAACAAAAACGAGGATGACAACGACATAATGGAAACTCT
TTGTAAAAATGATTTTGCACTGAAAATCAAAGTGAAAGAGATTACCTACATCAACAGAGA
CACCAAAATCATCCTGGAGACCAAGAGCAAGACCATTTACAAGCTGAACGGCGTGTCCGA
GCGGGACCTGAAGAAGTCAGTGCTGTGGCTCAAAGACAGCCTGCAGTGCACCTGCGAGGA
GATGAACGATATCAACGCGCCCTATCTGGTCATGGGACAGAAGCTGGGCGGGGAGCTGGT
GATCACCTCGGTGAAGCGGTGGCAGAAGGGGCAGAGAGAGTTCAAGCGCATCTCTCGTAG
CATCCGCAAGCTGCAGTGCTAGTCCTGGTGCCCCGCCTGCTCCTGGGGCCAGCTCGGGGC
TCAGCGACCCCCCTTCCACGTCCGCTCTGGGATCCAAGCACAGTCCCTTGCAGCCCCGGC
CCCAGCCCCGAGCAGCTTCTCTGGCCTTTTGCACGTTTGCACCCCCACCCCCACCCCCCC
AGCATTTCCTGAGTTATAAGGCCCTAGGAGGCCTCAGGAATGGATAGCTGTTTTCACGTA
AAGGAAAAACCCATCCAAGTCTCGTAGAACTCTTCCAACTAATAAAACCACGGCTATGTG
TATGGAGTTTTAAAATAGCTCACTTCAACGCTAATTTTGAATAGGTGCAACAGTGACTTG
GGTGTGATGTTTGGGGTTGTTTGGTTTGGGTCAACCAATTTTCACGTTCTGCTGAGCTTG
CCGTTATGTGCAAAAGAGCTTCACTTTTCAGCGTGGCCCAAACTTTGGTGGGTCTAAAAC
CCGGTTGAGATAAAGCTGGCTGTTATCTCAACGATCTCGCTCAGCTCCAGCCTGACACTC
AGCGCCTAAGTCATCTTACCTCCCTGATGGGAACTTAACAGCTGTAGCATGTCTTGCATT
TTGCGTTTCCAGGTAGAGTCCTTCCATTTATAAAAACCACAGTAACCACCGTAGCATGAG
TTCTTCAGATACAGGGCAAAGCAGACCAACTTTGTGATTGACCTGAGTACTTTACGCTTT
GTTTAAAACATGTTTTACTTACTTTTGCCACTTAAACCATTGTAGCTTACCTGTAATATA
CATAGTAGTTGACCCGGAAAAGTTGTAAAAATATTGCTTTAACCAACACTGTAAATATTT
CAGATAAACATTATATTCTTGTATATAAACTTGACCTCCTGTTTTACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAGCTGCCGTGCGGAGCCGAGCGCAGAGCCCCTCACCCGCGCAATCCTCCCCGCGCCT
GGCATCCCGTCTCTCCTGCAGCCCCGCCGCTCTCCTCCCGGCCCCGGAGCCTCACCGAGC
GCAGAGAGCGGGCCCGGGAGAAGCTCGGGCCCCGGCCGCCTCGTGCTTCTCCTGCTCGGC
TCGGCTCCCTCCGCCCCCCGGGGGTCGCGCGCCCACGATGCCGCAGGGCCCCGGCTCGCT
GCTGCTGCTAGTCCTCGCCTCGCACTGCTGCTTGGGTTCGGCGCGCGGGCTCTTCTTCGG
CCAGCCCGACTTCTCCTACAAGCGCAGCAACTGCAAGCCCATCCCGGCCAACCTGCAGCT
TTGCCACGGCATAGAGTACCAGAACATGCGGCTGCCCAACCTGCTGGGCCACGAGACCAT
GAAGGAGGTGCTGGAGCAGGCGGGCGCCTGGATCCCTCTGGTCATGAAGCAGTGCCACCC
GGACACCAAGAAGTTCCTGTGCTCGCTCTTCGCCCCTGTCTGCCTCGATGACCTGGACGA
AACCATCCAGCCGTGCCATTCGCTCTGCGTGCAGGTGAAGGACCGCTGCGCTCCGGTTAT
GTCCGCGTTCGGCTTCCCCTGGCCCGACATGCTGGAGTGCGACCGTTTCCCCCAGGACAA
CGACCTCTGCATCCCCCTCGCTAGCAGCGACCACCTCCTGCCGGCCACGGAGGAAGCTCC
AAAGGTATGTGAAGCCTGCAAAAACAAAAACGAGGATGACAACGACATAATGGAAACTCT
TTGTAAAAATGATTTTGCACTGAAAATCAAAGTGAAAGAGATTACCTACATCAACAGAGA
CACCAAAATCATCCTGGAGACCAAGAGCAAGACCATTTACAAGCTGAACGGCGTGTCCGA
GCGGGACCTGAAGAAGTCAGTGCTGTGGCTCAAAGACAGCCTGCAGTGCACCTGCGAGGA
GATGAACGATATCAACGCGCCCTATCTGGTCATGGGACAGAAGCTGGGCGGGGAGCTGGT
GATCACCTCGGTGAAGCGGTGGCAGAAGGGGCAGAGAGAGTTCAAGCGCATCTCTCGTAG
CATCCGCAAGCTGCAGTGCTAGTCCTGGTGCCCCGCCTGCTCCTGGGGCCAGCTCGGGGC
TCAGCGACCCCCCTTCCACGTCCGCTCTGGGATCCAAGCACAGTCCCTTGCAGCCCCGGC
CCCAGCCCCGAGCAGCTTCTCTGGCCTTTTGCACGTTTGCACCCCCACCCCCACCCCCCC
AGCATTTCCTGAGTTATAAGGCCCTAGGAGGCCTCAGGAATGGATAGCTGTTTTCACGTA
AAGGAAAAACCCATCCAAGTCTCGTAGAACTCTTCCAACTAATAAAACCACGGCTATGTG
TATGGAGTTTTAAAATAGCTCACTTCAACGCTAATTTTGAATAGGTGCAACAGTGACTTG
GGTGTGATGTTTGGGGTTGTTTGGTTTGGGTCAACCAATTTTCACGTTCTGCTGAGCTTG
CCGTTATGTGCAAAAGAGCTTCACTTTTCAGCGTGGCCCAAACTTTGGTGGGTCTAAAAC
CCGGTTGAGATAAAGCTGGCTGTTATCTCAACGATCTCGCTCAGCTCCAGCCTGACACTC
AGCGCCTAAGTCATCTTACCTCCCTGATGGGAACTTAACAGCTGTAGCATGTCTTGCATT
TTGCGTTTCCAGGTAGAGTCCTTCCATTTATAAAAACCACAGTAACCACCGTAGCATGAG
TTCTTCAGATACAGGGCAAAGCAGACCAACTTTGTGATTGACCTGAGTACTTTACGCTTT
GTTTAAAACATGTTTTACTTACTTTTGCCACTTAAACCATTGTAGCTTACCTGTAATATA
CATAGTAGTTGACCCGGAAAAGTTGTAAAAATATTGCTTTAACCAACACTGTAAATATTT
CAGATAAACATTATATTCTTGTATATAAACTTGACCTCCTGTTTTACC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               SFRP2_CANFA

Coded protein: 1 entry(ies)

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Protein identifier


               
               SFRP2_CANFA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1455-1664, - strand, RNAz p=0.905735

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1455-1664, - strand, RNAz p=0.905735

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               38-597, gnl|bosTau2|chr17 (1401073-1400521)
               

               
               38-597, gnl|Hg17|chr4 (155067771-155067210)
               

               
               38-597, gnl|Mm7|chr3 (83871354-83871900)
               


               
               797-1968, gnl|bosTau2|chr17 (1393574-1392394)
               

               
               797-1968, gnl|Hg17|chr4 (155060513-155059350)
               

               
               797-1968, gnl|Mm7|chr3 (83878093-83879288)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-597, gnl|bosTau2|chr17 (1401073-1400521)
               

               
               38-597, gnl|Hg17|chr4 (155067771-155067210)
               

               
               38-597, gnl|Mm7|chr3 (83871354-83871900)
               


               
               797-1968, gnl|bosTau2|chr17 (1393574-1392394)
               

               
               797-1968, gnl|Hg17|chr4 (155060513-155059350)
               

               
               797-1968, gnl|Mm7|chr3 (83878093-83879288)

Expressed library(ies): 33 entry(ies)

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Expressed library(ies): 33 entry(ies)

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               ret (1.02987)
               

               
               aor (0.976372)
               

               
               mga (0.801025)
               

               
               gul (0.532765)
               

               
               mcp (0.511945)
               

               
               ese (0.506009)
               

               
               mgp (0.461361)
               

               
               cmu (0.372787)
               

               
               sag (0.36543)
               

               
               eru (0.360144)
               

               
               sto (0.359648)
               

               
               fbs (0.350693)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               fat (0.294855)
               

               
               csk (0.281492)
               

               
               cga (0.279096)
               

               
               nmm (0.265604)
               

               
               eep (0.245128)
               

               
               cbe (0.239234)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               cut (0.169924)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (1.02987)
               

               
               aor (0.976372)
               

               
               mga (0.801025)
               

               
               gul (0.532765)
               

               
               mcp (0.511945)
               

               
               ese (0.506009)
               

               
               mgp (0.461361)
               

               
               cmu (0.372787)
               

               
               sag (0.36543)
               

               
               eru (0.360144)
               

               
               sto (0.359648)
               

               
               fbs (0.350693)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               fat (0.294855)
               

               
               csk (0.281492)
               

               
               cga (0.279096)
               

               
               nmm (0.265604)
               

               
               eep (0.245128)
               

               
               cbe (0.239234)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               cut (0.169924)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	38-597, gnl\|bosTau2\|chr17 (1401073-1400521)
	38-597, gnl\|Hg17\|chr4 (155067771-155067210)
	38-597, gnl\|Mm7\|chr3 (83871354-83871900)

	797-1968, gnl\|bosTau2\|chr17 (1393574-1392394)
	797-1968, gnl\|Hg17\|chr4 (155060513-155059350)
	797-1968, gnl\|Mm7\|chr3 (83878093-83879288)

	ret (1.02987)
	aor (0.976372)
	mga (0.801025)
	gul (0.532765)
	mcp (0.511945)
	ese (0.506009)
	mgp (0.461361)
	cmu (0.372787)
	sag (0.36543)
	eru (0.360144)
	sto (0.359648)
	fbs (0.350693)
	eye (0.341006)
	fhi (0.339155)
	fat (0.294855)
	csk (0.281492)
	cga (0.279096)
	nmm (0.265604)
	eep (0.245128)
	cbe (0.239234)
	nlu (0.191681)
	nep (0.183925)
	cut (0.169924)
	hyp (0.142837)
	cst (0.140036)
	nca (0.136874)
	ste (0.135208)
	tra (0.123092)
	pgl (0.118483)
	ebs (0.118301)
	jca (0.11396)
	cty (0.10408)
	ldo (0.0970026)