Ss1.1-raor031_c21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTCCCTCCAACCCTTCTCACCGGATCCAGTGTGCAACAGGCTATGAGCAGAGTGAGCA CAACGTGTGCCAAGACATAGATGAATGCACTGCAGGGACACACAGCTGTAGAGCTGACCA AGTGTGCATCAATTTACGAGGTTCCTTCACCTGTCAGTGCCCTCCCGGCTATCAGAAGCG AGGAGAGCAGTGTGTAGATGTAGATGAATGCAGCATCCCTCCATATTGCCACCAAAGGTG CGTGAACACACCAGGATCATTTTATTGCCAGTGCAGCCCTGGGTTTCAGTTGGCAGCAAA CAACTATACCTGTGTAGACATAAATGAATGTGATGCCAGCAATCAATGTGCTCAGCAATG CTACAACATTCTCGGTTCATTCATCTGTCAGTGCAATCAAGGATATGAGCTAAGCAGTGA TAGGCTCAACTGTGAAGACATTGATGAATGCAGAACCTCAAGCTACCTGTGTCAATATCA ATGTGTCAATGAACCTGGGAAATTCTCATGTATGTGCCCCCAGGGATACCAAGTGGTGAG AAGTAGAACATGTCAGGATATAAATGAGTGTGAGACCACAAATGAATGTCGGGAAGATGA AATGTGTTGGAATTATCACGGCGGCTTCCGTTGTTACCCACGAAATCCTTGTCAAGATCC CTACGTACTAACATCAGAGAACCGGTGCGTTTGCCCAGTCTCAAATGCAATGTGCCGAGA ACTTCCCCAATCCATAGTCTACAAATACATGAGCATCCGATCTGATAGGTCTGTGCCATC AGACATCTTCCAGATACAGGCCACAACCATTTATGCCAACACTATCAATACTTTTCGGAT TAAATCTGGAAATGAAAATGGAGAGTTCTACCTAAGACAAACAAGTCCTGTAAGTGCAAT GCTTGTGCTGGTGAAGTCGTTATCAGGACCAAGAGAATATATAGTGGACCTGGAGATGCT GACAGTCAACAGTATAGGAACCTTCCGCACTAGCTCAGTGTTAAGATTGACAATAATAGT GGGGCCATTTTCATTTTAGACTTTTTAAAGAGTCCACTAGAGGCATTTAAATCAGCCAAA GAATATTATTATCTTAAAGCACTATTTTATTTATAGATATATCTAGTACATCTACATCTA TATACTGTACACTCACCAGTAATTCAAACAATTACACCATGGTATAAAGTGGGCATTTAA TCTGTAAAAATTCAAAGTTTGTCTTTATTAATGTATGTAAATTAGACATTAATCCACTAA ACTGGTCTTCTTCAAGAGAGCTAAGCATACTCTATACAATGAAACTTGGATTCTTTTCTG TAAAAGTGGGAGCAAGCAATAATTATCTTCTGTGGTGCTTAAGGAAACTTACCTACAGCT CCAGTGACAGCCTCATAAGGAGGCAGCCATCATAACATTGAACAGCACGCAAGTTCAAGA ATGAGTTTTTTAACTGCTTTGTAAGAAAATGGAAAAAGTCAATAAAGATATATTTCCTTA GAAAATGAAGATAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTCCCTCCAACCCTTCTCACCGGATCCAGTGTGCAACAGGCTATGAGCAGAGTGAGCA CAACGTGTGCCAAGACATAGATGAATGCACTGCAGGGACACACAGCTGTAGAGCTGACCA AGTGTGCATCAATTTACGAGGTTCCTTCACCTGTCAGTGCCCTCCCGGCTATCAGAAGCG AGGAGAGCAGTGTGTAGATGTAGATGAATGCAGCATCCCTCCATATTGCCACCAAAGGTG CGTGAACACACCAGGATCATTTTATTGCCAGTGCAGCCCTGGGTTTCAGTTGGCAGCAAA CAACTATACCTGTGTAGACATAAATGAATGTGATGCCAGCAATCAATGTGCTCAGCAATG CTACAACATTCTCGGTTCATTCATCTGTCAGTGCAATCAAGGATATGAGCTAAGCAGTGA TAGGCTCAACTGTGAAGACATTGATGAATGCAGAACCTCAAGCTACCTGTGTCAATATCA ATGTGTCAATGAACCTGGGAAATTCTCATGTATGTGCCCCCAGGGATACCAAGTGGTGAG AAGTAGAACATGTCAGGATATAAATGAGTGTGAGACCACAAATGAATGTCGGGAAGATGA AATGTGTTGGAATTATCACGGCGGCTTCCGTTGTTACCCACGAAATCCTTGTCAAGATCC CTACGTACTAACATCAGAGAACCGGTGCGTTTGCCCAGTCTCAAATGCAATGTGCCGAGA ACTTCCCCAATCCATAGTCTACAAATACATGAGCATCCGATCTGATAGGTCTGTGCCATC AGACATCTTCCAGATACAGGCCACAACCATTTATGCCAACACTATCAATACTTTTCGGAT TAAATCTGGAAATGAAAATGGAGAGTTCTACCTAAGACAAACAAGTCCTGTAAGTGCAAT GCTTGTGCTGGTGAAGTCGTTATCAGGACCAAGAGAATATATAGTGGACCTGGAGATGCT GACAGTCAACAGTATAGGAACCTTCCGCACTAGCTCAGTGTTAAGATTGACAATAATAGT GGGGCCATTTTCATTTTAGACTTTTTAAAGAGTCCACTAGAGGCATTTAAATCAGCCAAA GAATATTATTATCTTAAAGCACTATTTTATTTATAGATATATCTAGTACATCTACATCTA TATACTGTACACTCACCAGTAATTCAAACAATTACACCATGGTATAAAGTGGGCATTTAA TCTGTAAAAATTCAAAGTTTGTCTTTATTAATGTATGTAAATTAGACATTAATCCACTAA ACTGGTCTTCTTCAAGAGAGCTAAGCATACTCTATACAATGAAACTTGGATTCTTTTCTG TAAAAGTGGGAGCAAGCAATAATTATCTTCTGTGGTGCTTAAGGAAACTTACCTACAGCT CCAGTGACAGCCTCATAAGGAGGCAGCCATCATAACATTGAACAGCACGCAAGTTCAAGA ATGAGTTTTTTAACTGCTTTGTAAGAAAATGGAAAAAGTCAATAAAGATATATTTCCTTA GAAAATGAAGATAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 878-996, + strand, RNAz p=0.609485 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 878-996, + strand, RNAz p=0.609485 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC014410, + |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 73-197, gnl|bosTau2|chr11 (20855136-20855012) | |
| 73-197, gnl|canFam2|chr10 (59798236-59798390) | |
| 73-197, gnl|danRer3|chrNA (101674773-101674917) | |
| 73-197, gnl|dasNov1|scaffold_6034 (31057-31211) | |
| 73-197, gnl|echTel1|scaffold_275865 (9839-9993) | |
| 73-197, gnl|fr1|chrUn (90599061-90599197) | |
| 73-197, gnl|galGal2|chr3 (2166599-2166445) | |
| 73-197, gnl|hg17|chr2 (56020371-56020525) | |
| 73-197, gnl|Hg17|chr2 (56020522-56020398) | |
| 73-197, gnl|mm7|chr11 (28862767-28862613) | |
| 73-197, gnl|Mm7|chr11 (28862614-28862738) | |
| 73-197, gnl|monDom2|scaffold_1 (18850510-18850664) | |
| 73-197, gnl|oryCun1|scaffold_213857 (39540-39694) | |
| 73-197, gnl|panTro1|chr12_random (21222527-21222373) | |
| 73-197, gnl|rheMac2|chr13 (56193759-56193913) | |
| 73-197, gnl|rn3|chr14 (109831680-109831526) | |
| 73-197, gnl|tetNig1|chr17 (5673794-5673654) | |
| 73-197, gnl|xenTro1|scaffold_392 (419541-419695) | |
| 316-437, gnl|bosTau2|chr11 (20849997-20849876) | |
| 316-437, gnl|canFam2|chr10 (59793262-59793408) | |
| 316-437, gnl|danRer3|chrNA (101670857-101670983) | |
| 316-437, gnl|dasNov1|scaffold_6034 (25631-25786) | |
| 316-437, gnl|echTel1|scaffold_275865 (2514-2664) | |
| 316-437, gnl|fr1|chrUn (90598345-90598484) | |
| 316-437, gnl|galGal2|chr3 (2172726-2172588) | |
| 316-437, gnl|hg17|chr2 (56015405-56015549) | |
| 316-437, gnl|Hg17|chr2 (56015530-56015409) | |
| 316-437, gnl|loxAfr1|scaffold_8449 (55081-54942) | |
| 316-437, gnl|mm7|chr11 (28867792-28867646) | |
| 316-437, gnl|Mm7|chr11 (28867665-28867786) | |
| 316-437, gnl|monDom2|scaffold_1 (18845730-18845875) | |
| 316-437, gnl|oryCun1|scaffold_213857 (34658-34804) | |
| 316-437, gnl|panTro1|chr12_random (21227507-21227363) | |
| 316-437, gnl|rheMac2|chr13 (56188772-56188910) | |
| 316-437, gnl|rn3|chr14 (109836361-109836215) | |
| 316-437, gnl|tetNig1|chr17 (5674392-5674257) | |
| 316-437, gnl|xenTro1|scaffold_392 (415028-415169) | |
| 557-681, gnl|bosTau2|chr11 (20844212-20844088) | |
| 557-681, gnl|canFam2|chr10 (59787992-59788147) | |
| 557-681, gnl|danRer3|chrNA (101669672-101669826) | |
| 557-681, gnl|dasNov1|scaffold_6034 (20048-20203) | |
| 557-681, gnl|echTel1|scaffold_318201 (36125-35971) | |
| 557-681, gnl|fr1|chrUn (90597255-90597391) | |
| 557-681, gnl|galGal2|chr3 (2178960-2178787) | |
| 557-681, gnl|hg17|chr2 (56009780-56009935) | |
| 557-681, gnl|Hg17|chr2 (56009910-56009786) | |
| 557-681, gnl|loxAfr1|scaffold_8449 (62345-62190) | |
| 557-681, gnl|mm7|chr11 (28873539-28873388) | |
| 557-681, gnl|Mm7|chr11 (28873408-28873532) | |
| 557-681, gnl|monDom2|scaffold_1 (18837087-18837241) | |
| 557-681, gnl|oryCun1|scaffold_213857 (27522-27677) | |
| 557-681, gnl|panTro1|chr12_random (21233351-21233196) | |
| 557-681, gnl|rheMac2|chr13 (56182693-56182848) | |
| 557-681, gnl|rn3|chr14 (109842004-109841852) | |
| 557-681, gnl|tetNig1|chr17 (5675254-5675118) | |
| 557-681, gnl|xenTro1|scaffold_392 (409522-409692) | |
| 878-1513, gnl|bosTau2|chr11 (20837621-20836988) | |
| 878-1513, gnl|Hg17|chr2 (56006020-56005379) | |
| 878-1513, gnl|Mm7|chr11 (28878163-28878758) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 73-197, gnl|bosTau2|chr11 (20855136-20855012) | |
| 73-197, gnl|canFam2|chr10 (59798236-59798390) | |
| 73-197, gnl|danRer3|chrNA (101674773-101674917) | |
| 73-197, gnl|dasNov1|scaffold_6034 (31057-31211) | |
| 73-197, gnl|echTel1|scaffold_275865 (9839-9993) | |
| 73-197, gnl|fr1|chrUn (90599061-90599197) | |
| 73-197, gnl|galGal2|chr3 (2166599-2166445) | |
| 73-197, gnl|hg17|chr2 (56020371-56020525) | |
| 73-197, gnl|Hg17|chr2 (56020522-56020398) | |
| 73-197, gnl|mm7|chr11 (28862767-28862613) | |
| 73-197, gnl|Mm7|chr11 (28862614-28862738) | |
| 73-197, gnl|monDom2|scaffold_1 (18850510-18850664) | |
| 73-197, gnl|oryCun1|scaffold_213857 (39540-39694) | |
| 73-197, gnl|panTro1|chr12_random (21222527-21222373) | |
| 73-197, gnl|rheMac2|chr13 (56193759-56193913) | |
| 73-197, gnl|rn3|chr14 (109831680-109831526) | |
| 73-197, gnl|tetNig1|chr17 (5673794-5673654) | |
| 73-197, gnl|xenTro1|scaffold_392 (419541-419695) | |
| 316-437, gnl|bosTau2|chr11 (20849997-20849876) | |
| 316-437, gnl|canFam2|chr10 (59793262-59793408) | |
| 316-437, gnl|danRer3|chrNA (101670857-101670983) | |
| 316-437, gnl|dasNov1|scaffold_6034 (25631-25786) | |
| 316-437, gnl|echTel1|scaffold_275865 (2514-2664) | |
| 316-437, gnl|fr1|chrUn (90598345-90598484) | |
| 316-437, gnl|galGal2|chr3 (2172726-2172588) | |
| 316-437, gnl|hg17|chr2 (56015405-56015549) | |
| 316-437, gnl|Hg17|chr2 (56015530-56015409) | |
| 316-437, gnl|loxAfr1|scaffold_8449 (55081-54942) | |
| 316-437, gnl|mm7|chr11 (28867792-28867646) | |
| 316-437, gnl|Mm7|chr11 (28867665-28867786) | |
| 316-437, gnl|monDom2|scaffold_1 (18845730-18845875) | |
| 316-437, gnl|oryCun1|scaffold_213857 (34658-34804) | |
| 316-437, gnl|panTro1|chr12_random (21227507-21227363) | |
| 316-437, gnl|rheMac2|chr13 (56188772-56188910) | |
| 316-437, gnl|rn3|chr14 (109836361-109836215) | |
| 316-437, gnl|tetNig1|chr17 (5674392-5674257) | |
| 316-437, gnl|xenTro1|scaffold_392 (415028-415169) | |
| 557-681, gnl|bosTau2|chr11 (20844212-20844088) | |
| 557-681, gnl|canFam2|chr10 (59787992-59788147) | |
| 557-681, gnl|danRer3|chrNA (101669672-101669826) | |
| 557-681, gnl|dasNov1|scaffold_6034 (20048-20203) | |
| 557-681, gnl|echTel1|scaffold_318201 (36125-35971) | |
| 557-681, gnl|fr1|chrUn (90597255-90597391) | |
| 557-681, gnl|galGal2|chr3 (2178960-2178787) | |
| 557-681, gnl|hg17|chr2 (56009780-56009935) | |
| 557-681, gnl|Hg17|chr2 (56009910-56009786) | |
| 557-681, gnl|loxAfr1|scaffold_8449 (62345-62190) | |
| 557-681, gnl|mm7|chr11 (28873539-28873388) | |
| 557-681, gnl|Mm7|chr11 (28873408-28873532) | |
| 557-681, gnl|monDom2|scaffold_1 (18837087-18837241) | |
| 557-681, gnl|oryCun1|scaffold_213857 (27522-27677) | |
| 557-681, gnl|panTro1|chr12_random (21233351-21233196) | |
| 557-681, gnl|rheMac2|chr13 (56182693-56182848) | |
| 557-681, gnl|rn3|chr14 (109842004-109841852) | |
| 557-681, gnl|tetNig1|chr17 (5675254-5675118) | |
| 557-681, gnl|xenTro1|scaffold_392 (409522-409692) | |
| 878-1513, gnl|bosTau2|chr11 (20837621-20836988) | |
| 878-1513, gnl|Hg17|chr2 (56006020-56005379) | |
| 878-1513, gnl|Mm7|chr11 (28878163-28878758) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| aor (3.31966) | |
| gul (3.019) | |
| ret (1.67353) | |
| rec (1.21149) | |
| sag (0.730861) | |
| ski (0.586941) | |
| liv (0.585137) | |
| bla (0.497389) | |
| tra (0.369276) | |
| sme (0.305437) | |
| fat (0.294855) | |
| lin (0.291206) | |
| csk (0.281492) | |
| kid (0.259471) | |
| eep (0.245128) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| fco (0.157208) | |
| sug (0.127291) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (3.31966) | |
| gul (3.019) | |
| ret (1.67353) | |
| rec (1.21149) | |
| sag (0.730861) | |
| ski (0.586941) | |
| liv (0.585137) | |
| bla (0.497389) | |
| tra (0.369276) | |
| sme (0.305437) | |
| fat (0.294855) | |
| lin (0.291206) | |
| csk (0.281492) | |
| kid (0.259471) | |
| eep (0.245128) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| fco (0.157208) | |
| sug (0.127291) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| spc (0.113366) | |
| ldo (0.0970026) |