Non-Coding RNA Search

Ss1.1-raor033_b24.5

Sequence:


               
               ATCTGACACAGCAAAACTTAATTATATCAAACACAGAAGCACCTGGAGATGATAAAGTGT
GTTCTGCCAATGGGTTGACGACCCAGACAGTCAACAGCTCCAGCCAAGGCTTCTGTGGTA
CTCTGGGATCGGCAGTTAAAAACGGAGGGCAGGAAACCATTGAAATGGTGAAAGGAGGAC
ACCAGACCTTGGAATCGTGCCGGGGGATGGGGCATCATCACACACTGGATTCCTGCAGAG
GGGGGGCCGTGGAGATGGACAACACTAGATACAGTTACTCAGAGTGGCACAGTTTCACGC
AACCTCGTCTTGGTGAAGAATCCATTAGAGGACACACTGGTTAAAAATTAAGCATAAAAG
AAATTGCATCTGTGTAATCAGAATGAAGACCACATACCGTCTCAAGATTATGTTCTTACG
TATAACTATGAAGGAAGAGGGTCTCCAGCGGGTTCTGTAGGGTGCTGCAGTGAAAAACAG
GAAGAAGATGGCCTTGACTTTTTAAATAATGTGGAAGCTAAATTTAGTGCATTAGCAGAA
ACATGTGCAAAGAGATAATGTTACAGTGCTACAATTAGACACGTCTTGGTTAGACATTCT
GGAACTTTCCAAAAGGGATATTGTAAAATTCAGTTTATATCTATCTATCTAGATAGATAT
GTATGAATATGTATGAAATTTTCTAAAATTTTTGAATATCACTATGCACTAATTTGTAGT
TCTAAAGCAACTTGTTACATATCTTTTCAAGAAGTCAAAAATGTTAAAGCAGATATTGCC
TCTTTTACTGCTGAGAAAATAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTGACACAGCAAAACTTAATTATATCAAACACAGAAGCACCTGGAGATGATAAAGTGT
GTTCTGCCAATGGGTTGACGACCCAGACAGTCAACAGCTCCAGCCAAGGCTTCTGTGGTA
CTCTGGGATCGGCAGTTAAAAACGGAGGGCAGGAAACCATTGAAATGGTGAAAGGAGGAC
ACCAGACCTTGGAATCGTGCCGGGGGATGGGGCATCATCACACACTGGATTCCTGCAGAG
GGGGGGCCGTGGAGATGGACAACACTAGATACAGTTACTCAGAGTGGCACAGTTTCACGC
AACCTCGTCTTGGTGAAGAATCCATTAGAGGACACACTGGTTAAAAATTAAGCATAAAAG
AAATTGCATCTGTGTAATCAGAATGAAGACCACATACCGTCTCAAGATTATGTTCTTACG
TATAACTATGAAGGAAGAGGGTCTCCAGCGGGTTCTGTAGGGTGCTGCAGTGAAAAACAG
GAAGAAGATGGCCTTGACTTTTTAAATAATGTGGAAGCTAAATTTAGTGCATTAGCAGAA
ACATGTGCAAAGAGATAATGTTACAGTGCTACAATTAGACACGTCTTGGTTAGACATTCT
GGAACTTTCCAAAAGGGATATTGTAAAATTCAGTTTATATCTATCTATCTAGATAGATAT
GTATGAATATGTATGAAATTTTCTAAAATTTTTGAATATCACTATGCACTAATTTGTAGT
TCTAAAGCAACTTGTTACATATCTTTTCAAGAAGTCAAAAATGTTAAAGCAGATATTGCC
TCTTTTACTGCTGAGAAAATAGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|481401|pir||S38589

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|481401|pir||S38589

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               139-673, - strand, RNAz p=0.997855

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               139-673, - strand, RNAz p=0.997855

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               59-318, gnl|bosTau2|chr24 (20345716-20345457)
               

               
               59-318, gnl|canFam2|chr7 (61435503-61435271)
               

               
               59-318, gnl|dasNov1|scaffold_1820 (83432-83669)
               

               
               59-318, gnl|echTel1|scaffold_234297 (10764-11000)
               

               
               59-318, gnl|galGal2|chr2 (105137353-105137610)
               

               
               59-318, gnl|hg17|chr18 (26830713-26830949)
               

               
               59-318, gnl|Hg17|chr18 (26831013-26830754)
               

               
               59-318, gnl|loxAfr1|scaffold_12916 (15623-15354)
               

               
               59-318, gnl|mm7|chr18 (20338961-20339185)
               

               
               59-318, gnl|Mm7|chr18 (20339249-20338993)
               

               
               59-318, gnl|monDom2|scaffold_4 (125446580-125446305)
               

               
               59-318, gnl|oryCun1|scaffold_181809 (4060-4294)
               

               
               59-318, gnl|panTro1|chr17 (22727280-22727516)
               

               
               59-318, gnl|rheMac2|chr18 (23939440-23939676)
               

               
               59-318, gnl|rn3|chr18 (11860612-11860820)
               

               
               59-318, gnl|xenTro1|scaffold_102 (1162792-1163037)
               


               
               359-802, gnl|bosTau2|chr24 (20343420-20342977)
               

               
               359-802, gnl|Hg17|chr18 (26828338-26827947)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-318, gnl|bosTau2|chr24 (20345716-20345457)
               

               
               59-318, gnl|canFam2|chr7 (61435503-61435271)
               

               
               59-318, gnl|dasNov1|scaffold_1820 (83432-83669)
               

               
               59-318, gnl|echTel1|scaffold_234297 (10764-11000)
               

               
               59-318, gnl|galGal2|chr2 (105137353-105137610)
               

               
               59-318, gnl|hg17|chr18 (26830713-26830949)
               

               
               59-318, gnl|Hg17|chr18 (26831013-26830754)
               

               
               59-318, gnl|loxAfr1|scaffold_12916 (15623-15354)
               

               
               59-318, gnl|mm7|chr18 (20338961-20339185)
               

               
               59-318, gnl|Mm7|chr18 (20339249-20338993)
               

               
               59-318, gnl|monDom2|scaffold_4 (125446580-125446305)
               

               
               59-318, gnl|oryCun1|scaffold_181809 (4060-4294)
               

               
               59-318, gnl|panTro1|chr17 (22727280-22727516)
               

               
               59-318, gnl|rheMac2|chr18 (23939440-23939676)
               

               
               59-318, gnl|rn3|chr18 (11860612-11860820)
               

               
               59-318, gnl|xenTro1|scaffold_102 (1162792-1163037)
               


               
               359-802, gnl|bosTau2|chr24 (20343420-20342977)
               

               
               359-802, gnl|Hg17|chr18 (26828338-26827947)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               aor (0.195274)
               

               
               ski (0.146735)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               ski (0.146735)

	59-318, gnl\|bosTau2\|chr24 (20345716-20345457)
	59-318, gnl\|canFam2\|chr7 (61435503-61435271)
	59-318, gnl\|dasNov1\|scaffold_1820 (83432-83669)
	59-318, gnl\|echTel1\|scaffold_234297 (10764-11000)
	59-318, gnl\|galGal2\|chr2 (105137353-105137610)
	59-318, gnl\|hg17\|chr18 (26830713-26830949)
	59-318, gnl\|Hg17\|chr18 (26831013-26830754)
	59-318, gnl\|loxAfr1\|scaffold_12916 (15623-15354)
	59-318, gnl\|mm7\|chr18 (20338961-20339185)
	59-318, gnl\|Mm7\|chr18 (20339249-20338993)
	59-318, gnl\|monDom2\|scaffold_4 (125446580-125446305)
	59-318, gnl\|oryCun1\|scaffold_181809 (4060-4294)
	59-318, gnl\|panTro1\|chr17 (22727280-22727516)
	59-318, gnl\|rheMac2\|chr18 (23939440-23939676)
	59-318, gnl\|rn3\|chr18 (11860612-11860820)
	59-318, gnl\|xenTro1\|scaffold_102 (1162792-1163037)

	359-802, gnl\|bosTau2\|chr24 (20343420-20342977)
	359-802, gnl\|Hg17\|chr18 (26828338-26827947)