Non-Coding RNA Search

Ss1.1-raor033_i19.5

Sequence:


               
               TTTTTTCTTTAAAGGACAAGAGCATGGTATTTCCTGAAAGAAGTAGTAGTATTTAGATTC
AAATTTTAGGTTCTAAAGATTTCATAGAAAATGACATGAGTACTGGTAAACATAGATACA
GTACTATAGAATTCAAAAGTGAAAGAAAAAAATTCAGATTACTCTTAATTAGCTAAGACA
AATTAACACAAACCTTTCTTTGTGGTTTAGGTAAATCTGAAGCACATCATGCTTAAAAGT
TATACCACAGCCATCTTCACCTTATTCTCTGAATGTGTCCCTTTGCAGATGCAGAGCAAA
TTCGCTTTGGTTCAGTGTGGTGAGTCAGCCATCATCTAAAATCCATTTCCCTCTCTTATT
CTTGCTTCTAAACAGCTCTATCCAATAGAACTTTTTGCAGTGATGCTGGCATGGACTCTA
TCTGCACCATCCAATAAGGTGGCTACTAGTAACACACAGTATTGAGCACTTGCAATGTGG
CTTGTGTAACAGAAGAACTGATTTTTTTTTAATTTTAATTAATTATTTTATTTAATTTTA
ATTAAACTTAAAGAGCTACATGGGCCTAGTGGCTACTTTATTGGACAGCATGGATAAAGA
ATATTTCCAAAATTTCTAGTAATACAGCACAGTTTAGGAGACTAAAATTGTGAGCCCCAA
ATTAAGCTGAATAAATGGTTCCTCCATAATTCAGAGATGTCAGATTTAAAACATCAGATG
TTTACATGCCTTTTTAATGGTAATTTTGCCCCCTGGGGAACCCAGTAAGATATCACTGTT
TTTGGTAATGTAAATAGTGTTTCTCACACCAAAAAAAAAAAAAATCTAACTAGATAATAA
CTTCTTTATCATCGGTCTTAATAATCAATGAGTCATGTCCGATTTCATAGTTAGATGAAT
CCTATTTCTCTGTCTAGCTTTCTGTTATCAACAATAACAGCACTTTAGGTCATTAAAGAT
CTCTCTTCAGAGCTATTGACCTGGTGGGTTGGTGACAGCAGATGAATACTTTTTCCCTGT
GCTTCTTTGCCAAATAATAACTACTTTTCAGATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTCTTTAAAGGACAAGAGCATGGTATTTCCTGAAAGAAGTAGTAGTATTTAGATTC
AAATTTTAGGTTCTAAAGATTTCATAGAAAATGACATGAGTACTGGTAAACATAGATACA
GTACTATAGAATTCAAAAGTGAAAGAAAAAAATTCAGATTACTCTTAATTAGCTAAGACA
AATTAACACAAACCTTTCTTTGTGGTTTAGGTAAATCTGAAGCACATCATGCTTAAAAGT
TATACCACAGCCATCTTCACCTTATTCTCTGAATGTGTCCCTTTGCAGATGCAGAGCAAA
TTCGCTTTGGTTCAGTGTGGTGAGTCAGCCATCATCTAAAATCCATTTCCCTCTCTTATT
CTTGCTTCTAAACAGCTCTATCCAATAGAACTTTTTGCAGTGATGCTGGCATGGACTCTA
TCTGCACCATCCAATAAGGTGGCTACTAGTAACACACAGTATTGAGCACTTGCAATGTGG
CTTGTGTAACAGAAGAACTGATTTTTTTTTAATTTTAATTAATTATTTTATTTAATTTTA
ATTAAACTTAAAGAGCTACATGGGCCTAGTGGCTACTTTATTGGACAGCATGGATAAAGA
ATATTTCCAAAATTTCTAGTAATACAGCACAGTTTAGGAGACTAAAATTGTGAGCCCCAA
ATTAAGCTGAATAAATGGTTCCTCCATAATTCAGAGATGTCAGATTTAAAACATCAGATG
TTTACATGCCTTTTTAATGGTAATTTTGCCCCCTGGGGAACCCAGTAAGATATCACTGTT
TTTGGTAATGTAAATAGTGTTTCTCACACCAAAAAAAAAAAAAATCTAACTAGATAATAA
CTTCTTTATCATCGGTCTTAATAATCAATGAGTCATGTCCGATTTCATAGTTAGATGAAT
CCTATTTCTCTGTCTAGCTTTCTGTTATCAACAATAACAGCACTTTAGGTCATTAAAGAT
CTCTCTTCAGAGCTATTGACCTGGTGGGTTGGTGACAGCAGATGAATACTTTTTCCCTGT
GCTTCTTTGCCAAATAATAACTACTTTTCAGATTAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-396, gnl|bosTau2|chr3 (73380353-73380746)
               

               
               1-396, gnl|Hg17|chr1 (39016000-39016390)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-396, gnl|bosTau2|chr3 (73380353-73380746)
               

               
               1-396, gnl|Hg17|chr1 (39016000-39016390)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               aor (0.195274)
               

               
               lin (0.145603)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               lin (0.145603)

	1-396, gnl\|bosTau2\|chr3 (73380353-73380746)
	1-396, gnl\|Hg17\|chr1 (39016000-39016390)