Non-Coding RNA Search

Ss1.1-raor034_g6.5

Sequence:


               
               GGTAGAATCCCAAAATTCATCTCTAAAGTGATTTTAAAATGCTGGAGGATTCCAATCAGT
ATAAATATATATATATATGTATACATATAAAAAATATAATTTTTCTATTTTTGTTTTTGA
TTTTAATTTGCAGAGATCTTCTGCCCGGAATCAATTTTGAGGGTTCAGATTTAGCTTGGG
GGGAAAAAACGTATTACACATCCTTCAGTATAGGAGATGAGGGAGTGAGAGAAAATATTT
TTTGAAGAAGCATTTCTGTAAAATTAGAAATTACTTTTTTTAATCTATTTAAAGTTTGGC
TTGGAGAATACCATTTCTGCCTATACGGCCTTGTGTTGCAAAACAGATCAGTGGCTGGGG
TGCCTGTTGTGGTGTGAGTGTGTGCAAGTGTGATTGAAGCCAAATCTGTTGTCATGTTAG
TAAATGATTTGAAAACTGAATGTAATACTTGAGTAGATTTTTTTTCTCCAGTTTTAAAAT
TTTACTCTTTTTGACCTTACTAATATTTCATTCAACAAGCTTATTAATCTCTGATTGTAC
TTGGAGATGTGACTACCAATCAGTTTGATACTCAAGGAAAGAATGGGGGTTATTAAAAAG
GAATTTAAAGTTTGTCTTGGATCTGAGTGGGTGCGTCCAGTGGAATTCAGAGATTTAAGC
TGCCCTGTGATTCCTCCACTCCCCAACCCCCAATTAGGAAACAATTTTTTAGTTACGTAA
TTTCTTATCTCTATTCTTTGACTACCCCACCCCCAACAGCAAAATAACCAGCCACCTACA
GAATTGTATGTTTCTAACTGCCTTGATCAGTCTAATCAAATCATATAACTGTTCTAAATT
TCTGACTTGAATATTATTTTACTCTTCTGTTCATGTATTTAGAACTTTAAATCCAGAATG
TTGGGGCAGGCTGACCCTACAGTAATTTATTTGTGTTAGTGTTAAAGATGAAACATTGTA
GCTGACTCTTTAAAGTGTTAAACAGTGTAGAGGTAAAAAAAGAAATCTCTTTTTAAAGGC
TTAATTTGGGGATGACTTTTTTTCTGTTTACAGTGTATTTATCATCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTAGAATCCCAAAATTCATCTCTAAAGTGATTTTAAAATGCTGGAGGATTCCAATCAGT
ATAAATATATATATATATGTATACATATAAAAAATATAATTTTTCTATTTTTGTTTTTGA
TTTTAATTTGCAGAGATCTTCTGCCCGGAATCAATTTTGAGGGTTCAGATTTAGCTTGGG
GGGAAAAAACGTATTACACATCCTTCAGTATAGGAGATGAGGGAGTGAGAGAAAATATTT
TTTGAAGAAGCATTTCTGTAAAATTAGAAATTACTTTTTTTAATCTATTTAAAGTTTGGC
TTGGAGAATACCATTTCTGCCTATACGGCCTTGTGTTGCAAAACAGATCAGTGGCTGGGG
TGCCTGTTGTGGTGTGAGTGTGTGCAAGTGTGATTGAAGCCAAATCTGTTGTCATGTTAG
TAAATGATTTGAAAACTGAATGTAATACTTGAGTAGATTTTTTTTCTCCAGTTTTAAAAT
TTTACTCTTTTTGACCTTACTAATATTTCATTCAACAAGCTTATTAATCTCTGATTGTAC
TTGGAGATGTGACTACCAATCAGTTTGATACTCAAGGAAAGAATGGGGGTTATTAAAAAG
GAATTTAAAGTTTGTCTTGGATCTGAGTGGGTGCGTCCAGTGGAATTCAGAGATTTAAGC
TGCCCTGTGATTCCTCCACTCCCCAACCCCCAATTAGGAAACAATTTTTTAGTTACGTAA
TTTCTTATCTCTATTCTTTGACTACCCCACCCCCAACAGCAAAATAACCAGCCACCTACA
GAATTGTATGTTTCTAACTGCCTTGATCAGTCTAATCAAATCATATAACTGTTCTAAATT
TCTGACTTGAATATTATTTTACTCTTCTGTTCATGTATTTAGAACTTTAAATCCAGAATG
TTGGGGCAGGCTGACCCTACAGTAATTTATTTGTGTTAGTGTTAAAGATGAAACATTGTA
GCTGACTCTTTAAAGTGTTAAACAGTGTAGAGGTAAAAAAAGAAATCTCTTTTTAAAGGC
TTAATTTGGGGATGACTTTTTTTCTGTTTACAGTGTATTTATCATCTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-1067, gnl|bosTau2|chr5 (22754531-22753476)
               

               
               2-1067, gnl|Hg17|chr12 (49156063-49157134)
               

               
               2-1067, gnl|Mm7|chr15 (99997562-99998745)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1067, gnl|bosTau2|chr5 (22754531-22753476)
               

               
               2-1067, gnl|Hg17|chr12 (49156063-49157134)
               

               
               2-1067, gnl|Mm7|chr15 (99997562-99998745)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               hea (0.204499)
               

               
               aor (0.195274)
               

               
               ssp (0.13552)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               ssp (0.13552)
               

               
               ebs (0.118301)

	2-1067, gnl\|bosTau2\|chr5 (22754531-22753476)
	2-1067, gnl\|Hg17\|chr12 (49156063-49157134)
	2-1067, gnl\|Mm7\|chr15 (99997562-99998745)