Non-Coding RNA Search

Ss1.1-raor034_k16.5

Sequence:


               
               AAAAAAAATTAGCTAAATAAAGAAATGCTTTGTTGCTGATTGAGACAGAGCAGAAGGAAA
GAGACATTATTGTCCATTGTTGTCAGCTGAAGGTACAGTGGAACTCTCTGGACGGAGGAA
GGATTTACCTAGAGCTACAACTTTTAAATGAGCATTCCTTGGGATTTGATTCTAAGCAAG
TTCCACTCAATGCTAGACCAGGCAATTCTGTCAAAAATTTACACTACCAGCCTAGTTTCC
TCCTGTATAGTCAAAACAAACATAGGAAGAGATAGTTCAAAAAGCCAAGGCACATAATTA
ACATTCATTTCATGTAAATGCCAAATAGTTTAAACTGGGCCATCTTGGAAATATTAAATC
CCAGTCCACTGCAATCAAAGCTATAAAATATGCATATGGCCAATTTATCTTTTAGAAGTC
AGCATAGTTGCAGCTCAAACCCTAAAAAGGGGAGTGAGAGATTTTAAACTGACTGTTGGA
TTTTAATTTTCAAAAAAACTTAAATGAAAATAAGGCATTGGGCTGGTCCAAGATGTAATA
CCAGTCAGTTAGCACCTGTGGTTGTTTCTAGTTTGTTGTCTTTTAATAAGTTTTAGCCTG
GCCTGATTTTTTTGAGGCATTACCTTGGTGGCAACAGGGCAGGGCCTGTACTTCCTCACA
GTAACCAGTGTCCTTGTGTCTGTCCCCAAGCGCAGGGATCTAAGCTGTGTCCAAAAGGGT
TCTGAATTCTCCAGGCTCATCCGTTTGAAGCAAGGAATCATCAAAAAACCACTTTGTCTC
CTTTGGGAGAATGACATGTCTTCAATATTTACATAGTTTATTCTTCTATATATACATATG
CAAAGCTTTCCTTAACAGTAAAGGGTACATATGCATAGTGGGAGGAGATCAGACCTTTAC
AGGTGAAGGAAAGCAACTTCAGAAATGAATTATTTTCGTTGCTTTATTATTTTTACCGAG
ACAGAGAAGTATTGTATTGAGAGATATCTATTTTCATAATCAATATATGCCTAAATTATA
TTTAAATCATTTCATTCTGTACTATATTTTCAATAATCATAGACTCTGTTGTTCATCCAC
TTAAGGGCACCTCTGTAGACATAACCTAAAACTGCAGAAGAATCTGAAAGATCCAAACAT
GCCATGCGTAGAAAATGCAGATTTGGGATCTGATGTGTAACTGCATTAATAAACGATGTG
AAATGTTGGAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAATTAGCTAAATAAAGAAATGCTTTGTTGCTGATTGAGACAGAGCAGAAGGAAA
GAGACATTATTGTCCATTGTTGTCAGCTGAAGGTACAGTGGAACTCTCTGGACGGAGGAA
GGATTTACCTAGAGCTACAACTTTTAAATGAGCATTCCTTGGGATTTGATTCTAAGCAAG
TTCCACTCAATGCTAGACCAGGCAATTCTGTCAAAAATTTACACTACCAGCCTAGTTTCC
TCCTGTATAGTCAAAACAAACATAGGAAGAGATAGTTCAAAAAGCCAAGGCACATAATTA
ACATTCATTTCATGTAAATGCCAAATAGTTTAAACTGGGCCATCTTGGAAATATTAAATC
CCAGTCCACTGCAATCAAAGCTATAAAATATGCATATGGCCAATTTATCTTTTAGAAGTC
AGCATAGTTGCAGCTCAAACCCTAAAAAGGGGAGTGAGAGATTTTAAACTGACTGTTGGA
TTTTAATTTTCAAAAAAACTTAAATGAAAATAAGGCATTGGGCTGGTCCAAGATGTAATA
CCAGTCAGTTAGCACCTGTGGTTGTTTCTAGTTTGTTGTCTTTTAATAAGTTTTAGCCTG
GCCTGATTTTTTTGAGGCATTACCTTGGTGGCAACAGGGCAGGGCCTGTACTTCCTCACA
GTAACCAGTGTCCTTGTGTCTGTCCCCAAGCGCAGGGATCTAAGCTGTGTCCAAAAGGGT
TCTGAATTCTCCAGGCTCATCCGTTTGAAGCAAGGAATCATCAAAAAACCACTTTGTCTC
CTTTGGGAGAATGACATGTCTTCAATATTTACATAGTTTATTCTTCTATATATACATATG
CAAAGCTTTCCTTAACAGTAAAGGGTACATATGCATAGTGGGAGGAGATCAGACCTTTAC
AGGTGAAGGAAAGCAACTTCAGAAATGAATTATTTTCGTTGCTTTATTATTTTTACCGAG
ACAGAGAAGTATTGTATTGAGAGATATCTATTTTCATAATCAATATATGCCTAAATTATA
TTTAAATCATTTCATTCTGTACTATATTTTCAATAATCATAGACTCTGTTGTTCATCCAC
TTAAGGGCACCTCTGTAGACATAACCTAAAACTGCAGAAGAATCTGAAAGATCCAAACAT
GCCATGCGTAGAAAATGCAGATTTGGGATCTGATGTGTAACTGCATTAATAAACGATGTG
AAATGTTGGAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               822-939, + strand, RNAz p=0.762119

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               822-939, + strand, RNAz p=0.762119

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_017634, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_017634, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1212, gnl|bosTau2|chr8 (38616909-38618104)
               

               
               3-1212, gnl|Hg17|chr8 (25342695-25341456)
               

               
               3-1212, gnl|Mm7|chr14 (62599662-62600841)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1212, gnl|bosTau2|chr8 (38616909-38618104)
               

               
               3-1212, gnl|Hg17|chr8 (25342695-25341456)
               

               
               3-1212, gnl|Mm7|chr14 (62599662-62600841)

Expressed library(ies): 25 entry(ies)

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Expressed library(ies): 25 entry(ies)

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               mga (0.64082)
               

               
               fat (0.442282)
               

               
               amn (0.417711)
               

               
               gul (0.355177)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.64082)
               

               
               fat (0.442282)
               

               
               amn (0.417711)
               

               
               gul (0.355177)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)

	3-1212, gnl\|bosTau2\|chr8 (38616909-38618104)
	3-1212, gnl\|Hg17\|chr8 (25342695-25341456)
	3-1212, gnl\|Mm7\|chr14 (62599662-62600841)

	mga (0.64082)
	fat (0.442282)
	amn (0.417711)
	gul (0.355177)
	vin (0.332557)
	sme (0.305437)
	kid (0.259471)
	sug (0.254582)
	bla (0.248694)
	jca (0.22792)
	tes (0.207814)
	aor (0.195274)
	col (0.195008)
	ton (0.1755)
	fbs (0.175346)
	sin (0.174948)
	rec (0.17307)
	tbr (0.154178)
	ssp (0.13552)
	pla (0.133672)
	lyg (0.133103)
	nmm (0.132802)
	ova (0.129132)
	tra (0.123092)
	ecc (0.115035)