Non-Coding RNA Search

Ss1.1-raor036_n14.5

Sequence:


               
               GGCCGGGTGTTAGGCCAGCTGTTCTCCTTTTCCTGTGCTTTCTCCTTTGAGAGATTGACA
GAAGCATTTGTTAACATCTTATTATTTACCTTGATTACATTTTTGTAACAAAGGAGTTTG
TAGCTTTATACCTATGATAGATTTCTGGGGACTGTGTCTCATTGCTGAGCAGTTTTTCCC
ACATCTGCTTGAGGAGAAAGTGTAGTTCAGAGCTGCCGCCAAGAGCTCGTGCTTGCTTTC
AGTGACTGCACAGAGCTTATGGCCACTTCATTCTGTCACTTCACAGCTAGGAGTGTTACA
TTTCATTAGATGTCCCCGAGTAAGTGTCAAGCTAGTTGCGATTCTATTTGTGAAGGACAG
AAGCCATTTAAGGCGGTCCTGACTTCTCTTAGACATAATGCAGAGTTCCTGCGATGATCA
CGTAACTGCTTAGGGTTATCCATTTATTTGTTTCATTACATGGGTGGTAAACTGTCATTA
AACTTATGTTTGAACCATAAACTTCCCTTCTGTGTTTCAAAAACCTTGCAACTAATCTAG
AAACTGGTGATAGTTAATGTGCATGTATGTATCTATACACCCACATACACTTACGACTTA
CATGGGAGAAACCTTACAAATCCATATGCCACAGATGAGCAAAATTATATCCAAATTTAT
ACTTCTTAAATTTCTCTACTGCAAGGCATAGAGAGTGCATGATGGTTTTCTTGATTTGCC
CGTATAGGTGATGGGTAATTTAATAAATTTGTGTGATATAAAAGTAGTGTACCATGTTCC
ACCACTTGATATTATCCCTTCCCTTTTCTGCAAAGGTACTATTGGCTGGAAGCAAACATT
CTGGTTAGCTTTGTAGGACTGTAGTCTTTCCCTACATAGTTTTTCTAGAAAACTGGTTTT
CTCATCTTGAGTGGGAAAGGGCAGGTCAAATCAGTGAATCTCAAATTGGGCACACGCGCC
TGCCATCGCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCGGGTGTTAGGCCAGCTGTTCTCCTTTTCCTGTGCTTTCTCCTTTGAGAGATTGACA
GAAGCATTTGTTAACATCTTATTATTTACCTTGATTACATTTTTGTAACAAAGGAGTTTG
TAGCTTTATACCTATGATAGATTTCTGGGGACTGTGTCTCATTGCTGAGCAGTTTTTCCC
ACATCTGCTTGAGGAGAAAGTGTAGTTCAGAGCTGCCGCCAAGAGCTCGTGCTTGCTTTC
AGTGACTGCACAGAGCTTATGGCCACTTCATTCTGTCACTTCACAGCTAGGAGTGTTACA
TTTCATTAGATGTCCCCGAGTAAGTGTCAAGCTAGTTGCGATTCTATTTGTGAAGGACAG
AAGCCATTTAAGGCGGTCCTGACTTCTCTTAGACATAATGCAGAGTTCCTGCGATGATCA
CGTAACTGCTTAGGGTTATCCATTTATTTGTTTCATTACATGGGTGGTAAACTGTCATTA
AACTTATGTTTGAACCATAAACTTCCCTTCTGTGTTTCAAAAACCTTGCAACTAATCTAG
AAACTGGTGATAGTTAATGTGCATGTATGTATCTATACACCCACATACACTTACGACTTA
CATGGGAGAAACCTTACAAATCCATATGCCACAGATGAGCAAAATTATATCCAAATTTAT
ACTTCTTAAATTTCTCTACTGCAAGGCATAGAGAGTGCATGATGGTTTTCTTGATTTGCC
CGTATAGGTGATGGGTAATTTAATAAATTTGTGTGATATAAAAGTAGTGTACCATGTTCC
ACCACTTGATATTATCCCTTCCCTTTTCTGCAAAGGTACTATTGGCTGGAAGCAAACATT
CTGGTTAGCTTTGTAGGACTGTAGTCTTTCCCTACATAGTTTTTCTAGAAAACTGGTTTT
CTCATCTTGAGTGGGAAAGGGCAGGTCAAATCAGTGAATCTCAAATTGGGCACACGCGCC
TGCCATCGCTGT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-972, gnl|bosTau2|chr11 (48127183-48126190)
               

               
               2-972, gnl|Hg17|chr2 (68319248-68318255)
               

               
               2-972, gnl|Mm7|chr11 (17150810-17151782)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-972, gnl|bosTau2|chr11 (48127183-48126190)
               

               
               2-972, gnl|Hg17|chr2 (68319248-68318255)
               

               
               2-972, gnl|Mm7|chr11 (17150810-17151782)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               aor (0.195274)
               

               
               cbl (0.114797)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               cbl (0.114797)

	2-972, gnl\|bosTau2\|chr11 (48127183-48126190)
	2-972, gnl\|Hg17\|chr2 (68319248-68318255)
	2-972, gnl\|Mm7\|chr11 (17150810-17151782)