Non-Coding RNA Search

Ss1.1-raor036_n8.5

Sequence:


               
               ACTGTTTTCAGTGTCATCCACCTAAATAGAGAAGCATGAGAAAGTGGGACAGAGGAGGTT
GAAGACCCAGAAGGGAGCTCAGCCTCTGTGCCACCTGCCCATCTCTGGGCCCTTCTGCTC
ATACTTGGATATTATTGGTGGGTGGAGAGAAGATGAGGGTAGTGGGGTGGAGGAAACTGA
TGGGGGTTGCATTTAGGTCAACCCAGATATCTGTGGGGGACACTTTTATTGTCTGGCACT
GGCATTAAGACTCTTTCTCTAAAACAAAATCCAAAAGACTCTCTTTCCTTCCATCCCTGA
TGTGTATTTGTTTTGTGAAATGAATGATCTTGGATTAGAAATTCTATGAGATCAGTCCTT
GATGATGGGGCTCTCGGGAAAGAAAAAGGAAAAAATATGTGTCGTCTGTCTTAATAAAGT
CTGGCCCTACACAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGTTTTCAGTGTCATCCACCTAAATAGAGAAGCATGAGAAAGTGGGACAGAGGAGGTT
GAAGACCCAGAAGGGAGCTCAGCCTCTGTGCCACCTGCCCATCTCTGGGCCCTTCTGCTC
ATACTTGGATATTATTGGTGGGTGGAGAGAAGATGAGGGTAGTGGGGTGGAGGAAACTGA
TGGGGGTTGCATTTAGGTCAACCCAGATATCTGTGGGGGACACTTTTATTGTCTGGCACT
GGCATTAAGACTCTTTCTCTAAAACAAAATCCAAAAGACTCTCTTTCCTTCCATCCCTGA
TGTGTATTTGTTTTGTGAAATGAATGATCTTGGATTAGAAATTCTATGAGATCAGTCCTT
GATGATGGGGCTCTCGGGAAAGAAAAAGGAAAAAATATGTGTCGTCTGTCTTAATAAAGT
CTGGCCCTACACAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-158, + strand, RNAz p=0.981829

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-158, + strand, RNAz p=0.981829

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-431, gnl|bosTau2|chr3 (19430313-19430752)
               

               
               1-431, gnl|Hg17|chr1 (144453549-144453152)
               

               
               1-431, gnl|Mm7|chr3 (96925213-96925611)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-431, gnl|bosTau2|chr3 (19430313-19430752)
               

               
               1-431, gnl|Hg17|chr1 (144453549-144453152)
               

               
               1-431, gnl|Mm7|chr3 (96925213-96925611)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               aor (0.195274)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)

	1-431, gnl\|bosTau2\|chr3 (19430313-19430752)
	1-431, gnl\|Hg17\|chr1 (144453549-144453152)
	1-431, gnl\|Mm7\|chr3 (96925213-96925611)

	aor (0.195274)
	sto (0.179824)
	cut (0.169924)
	ssp (0.13552)
	ese (0.126502)