Non-Coding RNA Search

Ss1.1-rcad03b_l14.5

Sequence:


               
               GTTCTCTGCCCCCAGGCAAGGTGAGGAACAGCAGGGTCTGTGACCCCCACGGCTTGCAGA
CTCTCTTCTTAGAGACGCTCTTCAAGCTGATGAGTCTGGGCTTCGTGCCCTACAAGTCGG
CGCAGGAGGTGATGAGGTGGGCACAGCTGTACCCAGCTTCGGGGCCCAGGAGGGAAAGAG
CGGACTCTGCCCCATGCCAGAGTCCCCAGAGATCCCTGCCCAGAGGCGGGAGCCCCAAAT
TCTCGGTCAGTTTCCTGGGCCCCAACTTGCCCCAGACAAGAGACAAGTGGCTTCCCGTCC
TGCTTTGGTGGCCCCACCGGTGAGATGGAGAGGACTGGGGGAGGCGGTGTCTTAGGCGGC
CTGTCTGCTGGTCTCTCTCAACCTTAGGAAAGGCTGTCTCCCCCTCGTGCCGAATTCGGC
ACGAGGGAAGGGCGGGCCCCGCTGCCGCGGCAGCACCGGGCGCTCTCACGCGGGTCTCGC
GTTCTTCTGCCAGGCCACGCGCCTCAGCGGCCTTTCCAACGCCGAGCTGGCGCGCACGCT
ACAAGGACTGCACAAAGAGGGTGCGCCCGCGGCTGGACGGGGAACCACGAGACTGAGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCTCTGCCCCCAGGCAAGGTGAGGAACAGCAGGGTCTGTGACCCCCACGGCTTGCAGA
CTCTCTTCTTAGAGACGCTCTTCAAGCTGATGAGTCTGGGCTTCGTGCCCTACAAGTCGG
CGCAGGAGGTGATGAGGTGGGCACAGCTGTACCCAGCTTCGGGGCCCAGGAGGGAAAGAG
CGGACTCTGCCCCATGCCAGAGTCCCCAGAGATCCCTGCCCAGAGGCGGGAGCCCCAAAT
TCTCGGTCAGTTTCCTGGGCCCCAACTTGCCCCAGACAAGAGACAAGTGGCTTCCCGTCC
TGCTTTGGTGGCCCCACCGGTGAGATGGAGAGGACTGGGGGAGGCGGTGTCTTAGGCGGC
CTGTCTGCTGGTCTCTCTCAACCTTAGGAAAGGCTGTCTCCCCCTCGTGCCGAATTCGGC
ACGAGGGAAGGGCGGGCCCCGCTGCCGCGGCAGCACCGGGCGCTCTCACGCGGGTCTCGC
GTTCTTCTGCCAGGCCACGCGCCTCAGCGGCCTTTCCAACGCCGAGCTGGCGCGCACGCT
ACAAGGACTGCACAAAGAGGGTGCGCCCGCGGCTGGACGGGGAACCACGAGACTGAGACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-238, + strand, RNAz p=0.741867

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-238, + strand, RNAz p=0.741867

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               154-270, + strand, RNAmicro p=0.976535

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               154-270, + strand, RNAmicro p=0.976535

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-595, gnl|bosTau2|chr19 (37125419-37126000)
               

               
               1-595, gnl|Hg17|chr17 (40681864-40681289)
               

               
               1-595, gnl|Mm7|chr11 (103309239-103308618)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-595, gnl|bosTau2|chr19 (37125419-37126000)
               

               
               1-595, gnl|Hg17|chr17 (40681864-40681289)
               

               
               1-595, gnl|Mm7|chr11 (103309239-103308618)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cag (0.151194)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               pla (0.133672)

	1-595, gnl\|bosTau2\|chr19 (37125419-37126000)
	1-595, gnl\|Hg17\|chr17 (40681864-40681289)
	1-595, gnl\|Mm7\|chr11 (103309239-103308618)