Non-Coding RNA Search

Ss1.1-rcad03b_p8.5

Sequence:


               
               GAGAGAAAGGGGACCAAGGAGGTGATCACAGTGGCAAGTGGGGAGATGAGAAGACAGATC
CAACTGCCCTGCAGCCTGGGATGGGGGTCCTTAAAAGGAAAGGGTCCCACCTGTCCTCCT
GTGAGGGTCTGCTGTGGGCTGGGGGCCAACCCCTGCCATTGATTGCCATTCTCCTGGGAA
GGCTGGGCCCTAGCCCCACGCCCACTATAGAGCTTCCTGTCCCTGCTGTTTATTTATTAC
ACGAATCTAAGTTATTCTCCCCCAGCCAGAGCCCTAGCACCCACTGCCTGGGAAAAGTGG
TGTGCGCTCCTGTGCTGGACTTTGTGTTTTATATCTGCAAATAAATCACATTTTATCTTA
TATTTAGGGAAAGCCGGCTGACAAAAGCAATCAAAAACTGTTTTAAAAAAAATTGCCCGG
TCCCTAGATTTTATTTATTTTTCCGACTTACAGTAAGCGAGTTATCCGCCTTCTGTATTT
TGTAGACTTTCTGAATAAAGTCAATTCTCTTTTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGAAAGGGGACCAAGGAGGTGATCACAGTGGCAAGTGGGGAGATGAGAAGACAGATC
CAACTGCCCTGCAGCCTGGGATGGGGGTCCTTAAAAGGAAAGGGTCCCACCTGTCCTCCT
GTGAGGGTCTGCTGTGGGCTGGGGGCCAACCCCTGCCATTGATTGCCATTCTCCTGGGAA
GGCTGGGCCCTAGCCCCACGCCCACTATAGAGCTTCCTGTCCCTGCTGTTTATTTATTAC
ACGAATCTAAGTTATTCTCCCCCAGCCAGAGCCCTAGCACCCACTGCCTGGGAAAAGTGG
TGTGCGCTCCTGTGCTGGACTTTGTGTTTTATATCTGCAAATAAATCACATTTTATCTTA
TATTTAGGGAAAGCCGGCTGACAAAAGCAATCAAAAACTGTTTTAAAAAAAATTGCCCGG
TCCCTAGATTTTATTTATTTTTCCGACTTACAGTAAGCGAGTTATCCGCCTTCTGTATTT
TGTAGACTTTCTGAATAAAGTCAATTCTCTTTTTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-188, + strand, RNAz p=0.90302

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-188, + strand, RNAz p=0.90302

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_012323, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_012323, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-516, gnl|bosTau2|chr5 (66771286-66770781)
               

               
               2-516, gnl|Hg17|chr22 (36936205-36937006)
               

               
               2-516, gnl|Mm7|chr15 (79441528-79442024)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-516, gnl|bosTau2|chr5 (66771286-66770781)
               

               
               2-516, gnl|Hg17|chr22 (36936205-36937006)
               

               
               2-516, gnl|Mm7|chr15 (79441528-79442024)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cag (0.151194)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)

	2-516, gnl\|bosTau2\|chr5 (66771286-66770781)
	2-516, gnl\|Hg17\|chr22 (36936205-36937006)
	2-516, gnl\|Mm7\|chr15 (79441528-79442024)