Ss1.1-rcad06b_d19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCTCCCAGGATGTTCTGATGAAGCAGATCCATAAGACGAGCCAGTGCATGTGGCTGATG CAGGCCCTGGGCTTCCTGCTGTCAGCGCTGCAAGTGGAGGAGATCCTTAAAAACCTGCAC TCCCTCATCTCGCCGTATATCCAGCAGCTGGAGAAGCTGGCAGAGGAGATCCCCAACCCC TCCAACAAGCTGGCCATCGTGCACATCTTGGGGCTCCTCTCGAACCTCTTCACCACCCTG GACGTCAGTCACCACGATGACGATCACGAAGGCCCTGAGCTCCGGAAGCTGCCCGTGCCG CAGGGACCCAACCCCGTGGTGGTGGTGCTGCAGCAGGTCTTCCAGCTGATCCAGAAGGTG CTGAGCAAATGGCTGAATGATGCCCAGGTGGTGGAGGCGGTGTGCGCTATCTTTGAGAAG TCCGTCAAGACGCTGCTGGACGACTTCGCCCCCATGGTGCCGCAGCTGTGTGAGATGCTG GGTCGGATGTACAGCACCATCCCCCAGGCCTCTGCTCTGGACCTCACGCGACAGCTGGTG CACATCTTTGCTCACGAGCCTGCTCACTTCCCCCCGATCGAGGCCCTCTTCCTGCTCGTC ACCTCGGTTACACTCACCCTCTTCGGCACAGGCTCTGAAGCGGAAGCCCGACTTGTTCCT GTGTGAACGCCTGGATGTCAAAGCTGTGTTCCAGTGTGCTGTGCTGGCCCTCAAGTTCCC CGAAGCACCTACTGTCAAGGCCTCCTGTGGCTTCTTTACAGAGCTGCTGCCTCGCTGCGG GGAGGTAGAACCTGTGGGGAAGGTGGTACAGGAGGACGGCCGCATGCTGCTCATAGCAGT GCTGGAGGCCATCGGGGGCCAGGCCTCCCGAAGCCTCATGGACTGCTTTGCCGACATCCT ATTTGCTCTGAACAAACACTGCTTCAGCCTCCTGAGTGTGTGGATCAAGGAGGCACTTCA GTCACCTGGCTTTCCCTCTGCCCGCCTCAGCCCTGAACAGAAGGACACCTTCAGCCAACA GATTCTTCGCGAGCGGGTAAACAAGAGGCGAGTGAAGGAGATGGTGAAGGAATTCACACT TCTGTGCCGGGGGCTGCATGGCACAGATTACACAGCTGACTACTGAGGGGCGCCCCCGTC CCGCCCACACTTCCTCCTTTACCGCTCCCAGCCCCCAAAGAGTAAACCTGAGTCCTCACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCTCCCAGGATGTTCTGATGAAGCAGATCCATAAGACGAGCCAGTGCATGTGGCTGATG CAGGCCCTGGGCTTCCTGCTGTCAGCGCTGCAAGTGGAGGAGATCCTTAAAAACCTGCAC TCCCTCATCTCGCCGTATATCCAGCAGCTGGAGAAGCTGGCAGAGGAGATCCCCAACCCC TCCAACAAGCTGGCCATCGTGCACATCTTGGGGCTCCTCTCGAACCTCTTCACCACCCTG GACGTCAGTCACCACGATGACGATCACGAAGGCCCTGAGCTCCGGAAGCTGCCCGTGCCG CAGGGACCCAACCCCGTGGTGGTGGTGCTGCAGCAGGTCTTCCAGCTGATCCAGAAGGTG CTGAGCAAATGGCTGAATGATGCCCAGGTGGTGGAGGCGGTGTGCGCTATCTTTGAGAAG TCCGTCAAGACGCTGCTGGACGACTTCGCCCCCATGGTGCCGCAGCTGTGTGAGATGCTG GGTCGGATGTACAGCACCATCCCCCAGGCCTCTGCTCTGGACCTCACGCGACAGCTGGTG CACATCTTTGCTCACGAGCCTGCTCACTTCCCCCCGATCGAGGCCCTCTTCCTGCTCGTC ACCTCGGTTACACTCACCCTCTTCGGCACAGGCTCTGAAGCGGAAGCCCGACTTGTTCCT GTGTGAACGCCTGGATGTCAAAGCTGTGTTCCAGTGTGCTGTGCTGGCCCTCAAGTTCCC CGAAGCACCTACTGTCAAGGCCTCCTGTGGCTTCTTTACAGAGCTGCTGCCTCGCTGCGG GGAGGTAGAACCTGTGGGGAAGGTGGTACAGGAGGACGGCCGCATGCTGCTCATAGCAGT GCTGGAGGCCATCGGGGGCCAGGCCTCCCGAAGCCTCATGGACTGCTTTGCCGACATCCT ATTTGCTCTGAACAAACACTGCTTCAGCCTCCTGAGTGTGTGGATCAAGGAGGCACTTCA GTCACCTGGCTTTCCCTCTGCCCGCCTCAGCCCTGAACAGAAGGACACCTTCAGCCAACA GATTCTTCGCGAGCGGGTAAACAAGAGGCGAGTGAAGGAGATGGTGAAGGAATTCACACT TCTGTGCCGGGGGCTGCATGGCACAGATTACACAGCTGACTACTGAGGGGCGCCCCCGTC CCGCCCACACTTCCTCCTTTACCGCTCCCAGCCCCCAAAGAGTAAACCTGAGTCCTCACT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 35-153, + strand, RNAz p=0.681818 | |
| 35-153, - strand, RNAz p=0.681818 | |
| 35-132, + strand, RNAz p=0.791798 | |
| 35-132, - strand, RNAz p=0.791798 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 35-153, + strand, RNAz p=0.681818 | |
| 35-153, - strand, RNAz p=0.681818 | |
| 35-132, + strand, RNAz p=0.791798 | |
| 35-132, - strand, RNAz p=0.791798 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 35-171, gnl|bosTau2|chr3 (70999868-70999732) | |
| 35-171, gnl|canFam2|chr15 (19307706-19307540) | |
| 35-171, gnl|danRer3|chrNA (26965709-26965551) | |
| 35-171, gnl|dasNov1|scaffold_79470 (4925-5091) | |
| 35-171, gnl|echTel1|scaffold_310635 (45928-45762) | |
| 35-171, gnl|fr1|chrUn (71479741-71479591) | |
| 35-171, gnl|galGal2|chr8 (20643943-20644101) | |
| 35-171, gnl|hg17|chr1 (44093208-44093374) | |
| 35-171, gnl|Hg17|chr1 (44093224-44093360) | |
| 35-171, gnl|loxAfr1|scaffold_2476 (97145-97311) | |
| 35-171, gnl|mm7|chr4 (117279994-117279826) | |
| 35-171, gnl|Mm7|chr4 (117279973-117279837) | |
| 35-171, gnl|monDom2|scaffold_70 (8878390-8878221) | |
| 35-171, gnl|oryCun1|scaffold_213522 (92798-92633) | |
| 35-171, gnl|panTro1|chr1 (45090034-45090200) | |
| 35-171, gnl|rheMac2|chr1 (46882410-46882576) | |
| 35-171, gnl|rn3|chr5 (138374080-138373911) | |
| 35-171, gnl|tetNig1|chr1_random (2960029-2960178) | |
| 35-171, gnl|xenTro1|scaffold_1 (6983828-6983997) | |
| 172-327, gnl|bosTau2|chr3 (70999566-70999410) | |
| 172-327, gnl|Hg17|chr1 (44093511-44093687) | |
| 172-327, gnl|Mm7|chr4 (117279703-117279547) | |
| 395-538, gnl|bosTau2|chr3 (70997509-70997366) | |
| 395-538, gnl|canFam2|chr15 (19305027-19304873) | |
| 395-538, gnl|danRer3|chrNA (26943563-26943419) | |
| 395-538, gnl|dasNov1|scaffold_79470 (7200-7354) | |
| 395-538, gnl|echTel1|scaffold_310635 (43761-43607) | |
| 395-538, gnl|fr1|chrUn (71478089-71477942) | |
| 395-538, gnl|galGal2|chr8 (20645769-20645915) | |
| 395-538, gnl|hg17|chr1 (44095638-44095792) | |
| 395-538, gnl|Hg17|chr1 (44095638-44095782) | |
| 395-538, gnl|loxAfr1|scaffold_2476 (99841-99995) | |
| 395-538, gnl|mm7|chr4 (117277499-117277345) | |
| 395-538, gnl|Mm7|chr4 (117277496-117277353) | |
| 395-538, gnl|monDom2|scaffold_70 (8875077-8874933) | |
| 395-538, gnl|oryCun1|scaffold_213522 (90426-90272) | |
| 395-538, gnl|panTro1|chr1 (45092460-45092614) | |
| 395-538, gnl|rheMac2|chr1 (46884813-46884967) | |
| 395-538, gnl|rn3|chr5 (138371569-138371415) | |
| 395-538, gnl|tetNig1|chr1_random (2961708-2961855) | |
| 395-538, gnl|xenTro1|scaffold_1 (6993789-6993943) | |
| 846-1029, gnl|bosTau2|chr3 (70991133-70990950) | |
| 846-1029, gnl|canFam2|chr15 (19298629-19298414) | |
| 846-1029, gnl|danRer3|chrNA (26925508-26925314) | |
| 846-1029, gnl|dasNov1|scaffold_21205 (53332-53547) | |
| 846-1029, gnl|echTel1|scaffold_273694 (7888-7673) | |
| 846-1029, gnl|fr1|chrUn (71473520-71473319) | |
| 846-1029, gnl|galGal2|chr8 (20653849-20654054) | |
| 846-1029, gnl|hg17|chr1 (44102078-44102294) | |
| 846-1029, gnl|Hg17|chr1 (44102078-44102261) | |
| 846-1029, gnl|loxAfr1|scaffold_2476 (106176-106392) | |
| 846-1029, gnl|mm7|chr4 (117271368-117271152) | |
| 846-1029, gnl|Mm7|chr4 (117271366-117271183) | |
| 846-1029, gnl|monDom2|scaffold_70 (8860006-8859789) | |
| 846-1029, gnl|oryCun1|scaffold_213522 (84315-84105) | |
| 846-1029, gnl|rheMac2|chr1 (46891246-46891462) | |
| 846-1029, gnl|rn3|chr5 (138365601-138365385) | |
| 846-1029, gnl|tetNig1|chr1_random (2966289-2966495) | |
| 846-1029, gnl|xenTro1|scaffold_1 (7005237-7005433) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 35-171, gnl|bosTau2|chr3 (70999868-70999732) | |
| 35-171, gnl|canFam2|chr15 (19307706-19307540) | |
| 35-171, gnl|danRer3|chrNA (26965709-26965551) | |
| 35-171, gnl|dasNov1|scaffold_79470 (4925-5091) | |
| 35-171, gnl|echTel1|scaffold_310635 (45928-45762) | |
| 35-171, gnl|fr1|chrUn (71479741-71479591) | |
| 35-171, gnl|galGal2|chr8 (20643943-20644101) | |
| 35-171, gnl|hg17|chr1 (44093208-44093374) | |
| 35-171, gnl|Hg17|chr1 (44093224-44093360) | |
| 35-171, gnl|loxAfr1|scaffold_2476 (97145-97311) | |
| 35-171, gnl|mm7|chr4 (117279994-117279826) | |
| 35-171, gnl|Mm7|chr4 (117279973-117279837) | |
| 35-171, gnl|monDom2|scaffold_70 (8878390-8878221) | |
| 35-171, gnl|oryCun1|scaffold_213522 (92798-92633) | |
| 35-171, gnl|panTro1|chr1 (45090034-45090200) | |
| 35-171, gnl|rheMac2|chr1 (46882410-46882576) | |
| 35-171, gnl|rn3|chr5 (138374080-138373911) | |
| 35-171, gnl|tetNig1|chr1_random (2960029-2960178) | |
| 35-171, gnl|xenTro1|scaffold_1 (6983828-6983997) | |
| 172-327, gnl|bosTau2|chr3 (70999566-70999410) | |
| 172-327, gnl|Hg17|chr1 (44093511-44093687) | |
| 172-327, gnl|Mm7|chr4 (117279703-117279547) | |
| 395-538, gnl|bosTau2|chr3 (70997509-70997366) | |
| 395-538, gnl|canFam2|chr15 (19305027-19304873) | |
| 395-538, gnl|danRer3|chrNA (26943563-26943419) | |
| 395-538, gnl|dasNov1|scaffold_79470 (7200-7354) | |
| 395-538, gnl|echTel1|scaffold_310635 (43761-43607) | |
| 395-538, gnl|fr1|chrUn (71478089-71477942) | |
| 395-538, gnl|galGal2|chr8 (20645769-20645915) | |
| 395-538, gnl|hg17|chr1 (44095638-44095792) | |
| 395-538, gnl|Hg17|chr1 (44095638-44095782) | |
| 395-538, gnl|loxAfr1|scaffold_2476 (99841-99995) | |
| 395-538, gnl|mm7|chr4 (117277499-117277345) | |
| 395-538, gnl|Mm7|chr4 (117277496-117277353) | |
| 395-538, gnl|monDom2|scaffold_70 (8875077-8874933) | |
| 395-538, gnl|oryCun1|scaffold_213522 (90426-90272) | |
| 395-538, gnl|panTro1|chr1 (45092460-45092614) | |
| 395-538, gnl|rheMac2|chr1 (46884813-46884967) | |
| 395-538, gnl|rn3|chr5 (138371569-138371415) | |
| 395-538, gnl|tetNig1|chr1_random (2961708-2961855) | |
| 395-538, gnl|xenTro1|scaffold_1 (6993789-6993943) | |
| 846-1029, gnl|bosTau2|chr3 (70991133-70990950) | |
| 846-1029, gnl|canFam2|chr15 (19298629-19298414) | |
| 846-1029, gnl|danRer3|chrNA (26925508-26925314) | |
| 846-1029, gnl|dasNov1|scaffold_21205 (53332-53547) | |
| 846-1029, gnl|echTel1|scaffold_273694 (7888-7673) | |
| 846-1029, gnl|fr1|chrUn (71473520-71473319) | |
| 846-1029, gnl|galGal2|chr8 (20653849-20654054) | |
| 846-1029, gnl|hg17|chr1 (44102078-44102294) | |
| 846-1029, gnl|Hg17|chr1 (44102078-44102261) | |
| 846-1029, gnl|loxAfr1|scaffold_2476 (106176-106392) | |
| 846-1029, gnl|mm7|chr4 (117271368-117271152) | |
| 846-1029, gnl|Mm7|chr4 (117271366-117271183) | |
| 846-1029, gnl|monDom2|scaffold_70 (8860006-8859789) | |
| 846-1029, gnl|oryCun1|scaffold_213522 (84315-84105) | |
| 846-1029, gnl|rheMac2|chr1 (46891246-46891462) | |
| 846-1029, gnl|rn3|chr5 (138365601-138365385) | |
| 846-1029, gnl|tetNig1|chr1_random (2966289-2966495) | |
| 846-1029, gnl|xenTro1|scaffold_1 (7005237-7005433) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| fhi (0.847889) | |
| fcc (0.39557) | |
| fbs (0.350693) | |
| med (0.232504) | |
| jej (0.197844) | |
| col (0.195008) | |
| nlu (0.191681) | |
| mga (0.160205) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| ldo (0.0970026) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.847889) | |
| fcc (0.39557) | |
| fbs (0.350693) | |
| med (0.232504) | |
| jej (0.197844) | |
| col (0.195008) | |
| nlu (0.191681) | |
| mga (0.160205) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| ldo (0.0970026) |