Ss1.1-rcad06b_e14.5
|
CGGGGCCCGTGGCGGCGCGGGCCGGGGAGCCGGCCGAGCGGCGCGGGGCGGCTCCGGTGT
CGGCGGGCGGCGCGGCGCCCCCGGAGGGGGCCATGTCTAACGGGGTGTACGTGCTGCCAA
GCGCGGCCAACGGAGACGTGAAGCCGGTGGTGTCCAGCACGCCTTTGGTGGACTTCCTGA
TGCAGCTGGAGGATTACACGCCTACGATCCCTGATGCAGTGACTGGTTACTACCTGAACC
GCGCTGGTTTTGAGGCCTCGGACCCACGCATAATTCGGCTCATCTCCCTAGCTGCCCAGA
AATTCATCTCAGATATTGCCAATGATGCCCTACAGCACTGCAAAATGAAGGGCACGGCCT
CTGGCAGCTCCCGAAGCAAGAGCAAGGACCGCAAGTACACTCTGACCATGGAGGACTTGA
CCCCTGCCCTCAGCGAGTATGGCATCAATGTGAAGAAGCCGCACTACTTCACCTGAGCCA
CCCGGTCTAAATGTCCTTGTCTGTCCCCTTGTCCCCACACCAGCCTGTTTTCATAATAAA
CTTTATTGTGACAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGGGGCCCGTGGCGGCGCGGGCCGGGGAGCCGGCCGAGCGGCGCGGGGCGGCTCCGGTGT
CGGCGGGCGGCGCGGCGCCCCCGGAGGGGGCCATGTCTAACGGGGTGTACGTGCTGCCAA
GCGCGGCCAACGGAGACGTGAAGCCGGTGGTGTCCAGCACGCCTTTGGTGGACTTCCTGA
TGCAGCTGGAGGATTACACGCCTACGATCCCTGATGCAGTGACTGGTTACTACCTGAACC
GCGCTGGTTTTGAGGCCTCGGACCCACGCATAATTCGGCTCATCTCCCTAGCTGCCCAGA
AATTCATCTCAGATATTGCCAATGATGCCCTACAGCACTGCAAAATGAAGGGCACGGCCT
CTGGCAGCTCCCGAAGCAAGAGCAAGGACCGCAAGTACACTCTGACCATGGAGGACTTGA
CCCCTGCCCTCAGCGAGTATGGCATCAATGTGAAGAAGCCGCACTACTTCACCTGAGCCA
CCCGGTCTAAATGTCCTTGTCTGTCCCCTTGTCCCCACACCAGCCTGTTTTCATAATAAA
CTTTATTGTGACAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
51-206, gnl|bosTau2|chr15 (32780666-32780511) |
|
51-206, gnl|canFam2|chr21 (33106085-33106261) |
|
51-206, gnl|danRer3|chr8 (20502384-20502227) |
|
51-206, gnl|dasNov1|scaffold_22726 (18452-18275) |
|
51-206, gnl|echTel1|scaffold_308473 (32000-31823) |
|
51-206, gnl|fr1|chrUn (192720956-192721124) |
|
51-206, gnl|hg17|chr11 (6589470-6589647) |
|
51-206, gnl|Hg17|chr11 (6589626-6589471) |
|
51-206, gnl|mm7|chr7 (101800250-101800423) |
|
51-206, gnl|Mm7|chr7 (101800406-101800251) |
|
51-206, gnl|monDom2|scaffold_43 (18312482-18312315) |
|
51-206, gnl|oryCun1|scaffold_211436 (8971-9135) |
|
51-206, gnl|panTro1|chr9 (6732884-6733061) |
|
51-206, gnl|rheMac2|chr14 (65591408-65591231) |
|
51-206, gnl|rn3|chr1 (163583756-163583929) |
|
51-206, gnl|xenTro1|scaffold_1389 (175872-176043) |
| |
|
385-557, gnl|bosTau2|chr15 (32779819-32779647) |
|
385-557, gnl|Hg17|chr11 (6588820-6588648) |
|
385-557, gnl|Mm7|chr7 (101799486-101799314) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
51-206, gnl|bosTau2|chr15 (32780666-32780511) |
|
51-206, gnl|canFam2|chr21 (33106085-33106261) |
|
51-206, gnl|danRer3|chr8 (20502384-20502227) |
|
51-206, gnl|dasNov1|scaffold_22726 (18452-18275) |
|
51-206, gnl|echTel1|scaffold_308473 (32000-31823) |
|
51-206, gnl|fr1|chrUn (192720956-192721124) |
|
51-206, gnl|hg17|chr11 (6589470-6589647) |
|
51-206, gnl|Hg17|chr11 (6589626-6589471) |
|
51-206, gnl|mm7|chr7 (101800250-101800423) |
|
51-206, gnl|Mm7|chr7 (101800406-101800251) |
|
51-206, gnl|monDom2|scaffold_43 (18312482-18312315) |
|
51-206, gnl|oryCun1|scaffold_211436 (8971-9135) |
|
51-206, gnl|panTro1|chr9 (6732884-6733061) |
|
51-206, gnl|rheMac2|chr14 (65591408-65591231) |
|
51-206, gnl|rn3|chr1 (163583756-163583929) |
|
51-206, gnl|xenTro1|scaffold_1389 (175872-176043) |
| |
|
385-557, gnl|bosTau2|chr15 (32779819-32779647) |
|
385-557, gnl|Hg17|chr11 (6588820-6588648) |
|
385-557, gnl|Mm7|chr7 (101799486-101799314) |
|
hyp (0.42851) |
|
fty (0.351679) |
|
csp (0.322373) |
|
cli (0.305623) |
|
cag (0.302389) |
|
nbm (0.297974) |
|
cov (0.264306) |
|
ece (0.229305) |
|
ton (0.1755) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
pty (0.142714) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jej (0.0989218) |
|
hyp (0.42851) |
|
fty (0.351679) |
|
csp (0.322373) |
|
cli (0.305623) |
|
cag (0.302389) |
|
nbm (0.297974) |
|
cov (0.264306) |
|
ece (0.229305) |
|
ton (0.1755) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
pty (0.142714) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jej (0.0989218) |
