Non-Coding RNA Search

Ss1.1-rcad07b_j2.5

Sequence:


               
               TCCCTCTCTCGTGTTTCTAAGCTAGGAAACACCAGTAAGTGCTACTACCCACCCCTCTGC
AACATCTCCAGACTGTCGAGTTTAGATACTCCCTTCCTCCCTCTACTTTTTAATCCTCTG
CACTTCCGTCTATAAATTTTAAAGCATTTTCCTCCTCTCTGGCTGGCGGGTTGTCCATCT
GGTCCTGCCTCTCTCAGTGTCTTTGACCTTGGTGACCTTATTTATCTCGGGTAAGGTGGA
AAGGGAGTCTGACCTGGAACCGATGCCACTCAGGCTGTCATTCGATCCACTTCCCACACA
AACAGAGAGCCACAAACGTGGCACTGTTGTCCTAGCGTCCCTCATCCCAGAAGAGACATC
TGCATATCTCAGAAAAGAAGATCCTATCATGGATAGAAGCTGTGTGGAACATAGAGTCAC
CCATGTGCGTCCCCAAAGAGGAGCTCATGTGTCTGAAGGGTGTATTTTCTTCTGTCATGT
TGATGTTTCCTTCTTAATTTATAGGATTTTTTAATGTAAAAAAATTGCACTGAACTCTAT
AAACGTAAATGCTGCTTTTTGTAGCTCATATAAAAAAGGTTCCATATTTGTAGTATACTG
CAATAATATTTTTTACATCCAGCTCTTTAAGTGATCTTTGTTCTGGTGGCTTTGTGTAAA
TATGTTTGCCCTAGTTGAATTAAGAAACTTTAAAGGTTATAAAATGAAAACAAAAAATAA
AGTATTTGTTTTCTGCTAGATGCAAAAAACGACTAAGCATGTATATTTTATCAAGCTCAT
ATATTTTTTGAAGTTACAAACTATAAAAATGTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCTCTCTCGTGTTTCTAAGCTAGGAAACACCAGTAAGTGCTACTACCCACCCCTCTGC
AACATCTCCAGACTGTCGAGTTTAGATACTCCCTTCCTCCCTCTACTTTTTAATCCTCTG
CACTTCCGTCTATAAATTTTAAAGCATTTTCCTCCTCTCTGGCTGGCGGGTTGTCCATCT
GGTCCTGCCTCTCTCAGTGTCTTTGACCTTGGTGACCTTATTTATCTCGGGTAAGGTGGA
AAGGGAGTCTGACCTGGAACCGATGCCACTCAGGCTGTCATTCGATCCACTTCCCACACA
AACAGAGAGCCACAAACGTGGCACTGTTGTCCTAGCGTCCCTCATCCCAGAAGAGACATC
TGCATATCTCAGAAAAGAAGATCCTATCATGGATAGAAGCTGTGTGGAACATAGAGTCAC
CCATGTGCGTCCCCAAAGAGGAGCTCATGTGTCTGAAGGGTGTATTTTCTTCTGTCATGT
TGATGTTTCCTTCTTAATTTATAGGATTTTTTAATGTAAAAAAATTGCACTGAACTCTAT
AAACGTAAATGCTGCTTTTTGTAGCTCATATAAAAAAGGTTCCATATTTGTAGTATACTG
CAATAATATTTTTTACATCCAGCTCTTTAAGTGATCTTTGTTCTGGTGGCTTTGTGTAAA
TATGTTTGCCCTAGTTGAATTAAGAAACTTTAAAGGTTATAAAATGAAAACAAAAAATAA
AGTATTTGTTTTCTGCTAGATGCAAAAAACGACTAAGCATGTATATTTTATCAAGCTCAT
ATATTTTTTGAAGTTACAAACTATAAAAATGTTAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               434-626, + strand, RNAz p=0.88305

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               434-626, + strand, RNAz p=0.88305

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB011125, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB011125, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-427, gnl|bosTau2|chr19 (37874379-37874800)
               

               
               1-427, gnl|Hg17|chr17 (39830243-39829739)
               

               
               1-427, gnl|Mm7|chr11 (102587023-102586506)
               


               
               434-816, gnl|bosTau2|chr19 (37874783-37875169)
               

               
               434-816, gnl|Hg17|chr17 (39829756-39829371)
               

               
               434-816, gnl|Mm7|chr11 (102586521-102586149)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-427, gnl|bosTau2|chr19 (37874379-37874800)
               

               
               1-427, gnl|Hg17|chr17 (39830243-39829739)
               

               
               1-427, gnl|Mm7|chr11 (102587023-102586506)
               


               
               434-816, gnl|bosTau2|chr19 (37874783-37875169)
               

               
               434-816, gnl|Hg17|chr17 (39829756-39829371)
               

               
               434-816, gnl|Mm7|chr11 (102586521-102586149)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               fcc (0.197785)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

	1-427, gnl\|bosTau2\|chr19 (37874379-37874800)
	1-427, gnl\|Hg17\|chr17 (39830243-39829739)
	1-427, gnl\|Mm7\|chr11 (102587023-102586506)

	434-816, gnl\|bosTau2\|chr19 (37874783-37875169)
	434-816, gnl\|Hg17\|chr17 (39829756-39829371)
	434-816, gnl\|Mm7\|chr11 (102586521-102586149)

	fcc (0.197785)
	col (0.195008)
	mgm (0.180343)
	ton (0.1755)
	fco (0.157208)
	cag (0.151194)
	thg (0.126791)
	ese (0.126502)
	tra (0.123092)
	eru (0.120048)
	spc (0.113366)