Ss1.1-rcad07b_j24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGCCCCACTTTGCTCAGGGCACAGGCTCAGGGTTGCCTGCCCACCTTCCTGTAACTGC AAGAGCCTTGCCCGTGGACAAGGAAGCTCACCCCCACTCAACAGCACTGTACTTAAGAGC CGCCGAGGCTATGCTCTGGGACACTTTTTGGACACTTTTCAAATTGCACCCTAAACAGGA AGAGGAGGGGCCGGGAACCCCAGGCTCTCTCTGCCTTTTCTCTCCACCTCCACTTCAGTG CTCCTGCTACAAATTTCTTGTCCTGCATCTTTGATAACTTGGAGTCACAACCAAGCGAAT GTCAAAATAAAGAAGGAATTTGACATAGAAAAAAACCTCGTGCCGAATTCGGCACGAGGA GTCCCCCCAACTAAAGACTATGCTCAGGGAGGCCCAGGGCCTTCCGAAGGTTAAGCCGCA GAGGAGTAGTGCCTGAGAACAGTCTGGCAACAGCCCTGAAACCTTCCAACAACTGAACAG GAGCCTTTGGTGAGGTCTTGGACCCGGGATTGGTGCCGCCACCGGGCAGTCCTCCATCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGCCCCACTTTGCTCAGGGCACAGGCTCAGGGTTGCCTGCCCACCTTCCTGTAACTGC AAGAGCCTTGCCCGTGGACAAGGAAGCTCACCCCCACTCAACAGCACTGTACTTAAGAGC CGCCGAGGCTATGCTCTGGGACACTTTTTGGACACTTTTCAAATTGCACCCTAAACAGGA AGAGGAGGGGCCGGGAACCCCAGGCTCTCTCTGCCTTTTCTCTCCACCTCCACTTCAGTG CTCCTGCTACAAATTTCTTGTCCTGCATCTTTGATAACTTGGAGTCACAACCAAGCGAAT GTCAAAATAAAGAAGGAATTTGACATAGAAAAAAACCTCGTGCCGAATTCGGCACGAGGA GTCCCCCCAACTAAAGACTATGCTCAGGGAGGCCCAGGGCCTTCCGAAGGTTAAGCCGCA GAGGAGTAGTGCCTGAGAACAGTCTGGCAACAGCCCTGAAACCTTCCAACAACTGAACAG GAGCCTTTGGTGAGGTCTTGGACCCGGGATTGGTGCCGCCACCGGGCAGTCCTCCATCCT |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 351-461, - strand, RNAz p=0.933235 | |
| 376-482, + strand, RNAz p=0.738297 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 351-461, - strand, RNAz p=0.933235 | |
| 376-482, + strand, RNAz p=0.738297 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 4-331, gnl|bosTau2|chr16 (45717994-45718313) | |
| 4-331, gnl|Hg17|chr1 (176517510-176517847) | |
| 4-331, gnl|Mm7|chr1 (156038206-156037851) | |
| 351-494, gnl|bosTau2|chr15 (9209653-9209509) | |
| 351-494, gnl|canFam2|chr5 (19394436-19394238) | |
| 351-494, gnl|canFam2|chr5 (19394238-19394542) | |
| 351-494, gnl|fr1|chrUn (188002639-188002816) | |
| 351-494, gnl|hg17|chr11 (116581748-116581907) | |
| 351-494, gnl|hg17|chr11 (116514530-116514796) | |
| 351-494, gnl|Hg17|chr11 (116581828-116581701) | |
| 351-494, gnl|loxAfr1|scaffold_49964 (5156-4946) | |
| 351-494, gnl|loxAfr1|scaffold_49964 (4946-5256) | |
| 351-494, gnl|mm7|chr9 (45887146-45886975) | |
| 351-494, gnl|mm7|chr9 (45886975-45887191) | |
| 351-494, gnl|oryCun1|scaffold_139291 (6114-5951) | |
| 351-494, gnl|oryCun1|scaffold_139291 (5951-6201) | |
| 351-494, gnl|panTro1|chr9 (118582605-118582764) | |
| 351-494, gnl|panTro1|chr9 (118515104-118515370) | |
| 351-494, gnl|rheMac2|chr14 (115604568-115604727) | |
| 351-494, gnl|rheMac2|chr14 (115534647-115534915) | |
| 351-494, gnl|rn3|chr8 (48910053-48909877) | |
| 351-494, gnl|rn3|chr8 (48909877-48910100) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-331, gnl|bosTau2|chr16 (45717994-45718313) | |
| 4-331, gnl|Hg17|chr1 (176517510-176517847) | |
| 4-331, gnl|Mm7|chr1 (156038206-156037851) | |
| 351-494, gnl|bosTau2|chr15 (9209653-9209509) | |
| 351-494, gnl|canFam2|chr5 (19394436-19394238) | |
| 351-494, gnl|canFam2|chr5 (19394238-19394542) | |
| 351-494, gnl|fr1|chrUn (188002639-188002816) | |
| 351-494, gnl|hg17|chr11 (116581748-116581907) | |
| 351-494, gnl|hg17|chr11 (116514530-116514796) | |
| 351-494, gnl|Hg17|chr11 (116581828-116581701) | |
| 351-494, gnl|loxAfr1|scaffold_49964 (5156-4946) | |
| 351-494, gnl|loxAfr1|scaffold_49964 (4946-5256) | |
| 351-494, gnl|mm7|chr9 (45887146-45886975) | |
| 351-494, gnl|mm7|chr9 (45886975-45887191) | |
| 351-494, gnl|oryCun1|scaffold_139291 (6114-5951) | |
| 351-494, gnl|oryCun1|scaffold_139291 (5951-6201) | |
| 351-494, gnl|panTro1|chr9 (118582605-118582764) | |
| 351-494, gnl|panTro1|chr9 (118515104-118515370) | |
| 351-494, gnl|rheMac2|chr14 (115604568-115604727) | |
| 351-494, gnl|rheMac2|chr14 (115534647-115534915) | |
| 351-494, gnl|rn3|chr8 (48910053-48909877) | |
| 351-494, gnl|rn3|chr8 (48909877-48910100) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.151194) |