Non-Coding RNA Search

Ss1.1-rcad11b_j18.5

Sequence:


               
               CTAAGGACCACACAGCTGAAAAACTCTTCTTCAGATGCAAGGCCACACCTCCGATCAGAG
GCCCAGCTTGCTAATTAAAATCACAATGAAAATCAGCATGGGAGGGGGAGGGGTGACTCA
ACATCCTTACCCAGAAACTGAAACACTCACGACTGACTCACACAGGACACAGCAGATTTT
CTCCAAAAGGCATTTGAAAAAAAAAAAAAAAAAAAAATTCAAGTCCCAGCCGCCCTCTAT
CTACTGACCTAGTAAACTCCATGTCTGAGTCAGTTACACAAACCTGACTCCCAGCCACCT
CAGCAGAGCCGGGCGCTGGAAGAGCCAGCGTGGCCTCCTGTGGATGGGAATGTTGAATGG
TGTTTGCATGTGCATTTTTCAGCAGATGAAGAGTCTCCAAATCTCCCGGTTCCGGCATCT
ATGAAGACTGAATTTCCCTCTGCCATGGGCCTCACTGCCATTACCAAGAAGAAGGCTGCC
TAAGACTTAAGCCAGCTTGGAAGGATGAAGAGCCAAGAGGGGAACTGAGGAGATCTGGGG
ACCGAGTCTGGATCTTGGAGCCCACTGTGCCTGGAGCAAAATTCTCCCCCCTCCCTCTCC
ACCCCAGACTTTCCAGTTATAGGAACAAAGCAGTTCCTCTTATGTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAAGGACCACACAGCTGAAAAACTCTTCTTCAGATGCAAGGCCACACCTCCGATCAGAG
GCCCAGCTTGCTAATTAAAATCACAATGAAAATCAGCATGGGAGGGGGAGGGGTGACTCA
ACATCCTTACCCAGAAACTGAAACACTCACGACTGACTCACACAGGACACAGCAGATTTT
CTCCAAAAGGCATTTGAAAAAAAAAAAAAAAAAAAAATTCAAGTCCCAGCCGCCCTCTAT
CTACTGACCTAGTAAACTCCATGTCTGAGTCAGTTACACAAACCTGACTCCCAGCCACCT
CAGCAGAGCCGGGCGCTGGAAGAGCCAGCGTGGCCTCCTGTGGATGGGAATGTTGAATGG
TGTTTGCATGTGCATTTTTCAGCAGATGAAGAGTCTCCAAATCTCCCGGTTCCGGCATCT
ATGAAGACTGAATTTCCCTCTGCCATGGGCCTCACTGCCATTACCAAGAAGAAGGCTGCC
TAAGACTTAAGCCAGCTTGGAAGGATGAAGAGCCAAGAGGGGAACTGAGGAGATCTGGGG
ACCGAGTCTGGATCTTGGAGCCCACTGTGCCTGGAGCAAAATTCTCCCCCCTCCCTCTCC
ACCCCAGACTTTCCAGTTATAGGAACAAAGCAGTTCCTCTTATGTTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               266-379, + strand, RNAz p=0.771902

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               266-379, + strand, RNAz p=0.771902

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               3-407, gnl|bosTau2|chr22 (5712026-5712404)
               

               
               3-407, gnl|Hg17|chr3 (27550218-27550620)
               

               
               3-407, gnl|Mm7|chr14 (12445395-12445729)
               


               
               420-646, gnl|bosTau2|chr22 (5693867-5693641)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-407, gnl|bosTau2|chr22 (5712026-5712404)
               

               
               3-407, gnl|Hg17|chr3 (27550218-27550620)
               

               
               3-407, gnl|Mm7|chr14 (12445395-12445729)
               


               
               420-646, gnl|bosTau2|chr22 (5693867-5693641)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               gul (0.177588)
               

               
               cag (0.151194)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               cag (0.151194)

	3-407, gnl\|bosTau2\|chr22 (5712026-5712404)
	3-407, gnl\|Hg17\|chr3 (27550218-27550620)
	3-407, gnl\|Mm7\|chr14 (12445395-12445729)

	420-646, gnl\|bosTau2\|chr22 (5693867-5693641)