Non-Coding RNA Search

Ss1.1-rcad11b_m12.5

Sequence:


               
               CTCTGGGGAGAGGGGGAGGCAGGAAGGACGCGGCAGGGCGGAAGCCTGTGACCTTACTTG
AACAGTTCCACTGGTGAGGCTGGAGAGAACGAACACACCACCTGTACATATCGCCCTCTT
CCCTCCCTGACGCTCGTGTAGTGTATAAGCTTCGTCAGGCGCCTCCCTTCCCGCCGATTC
CCTGAGAGCCACCTCTGCTGGAGGGTGGCAGGTAGAGCCCGCACCACTTGCATCCCTGAT
ACGCATTTGATGGGATTGGGGGAAGCAGCTTATCCCTATAGCTTTACCTTGCTTGGCTTG
GCTATAAAAAGTGCTTCTCCCCCTCTTGTCCCATTAGAGGACTCGGTTCCCCCATTCTTG
CTGCTTTGTCCCTCACCGACTCCTTGCAGGATCGATTCCTTTTAAAATGATCCTGAATCT
AGCTTTGCCTTGGAGACCCCAGTGGGTGCTGCTCCTGCCAGGTTCAAGCCTCTGTTTCAT
CTCCAACCCTCTCTGCCAGTTTGGCCCCCAAAAGCTTGGTGGCTCAAGACTGTTAGCCTG
GCAGATCCAGGGGTGACACCTCACTCCGGGAGAGGGAAGATCTTGGAACAGGCAGGATGC
CCGCCGCCGCTTTCAGCTGCCTCCTCGCTCACCTTCCCCGTTGGCCTCCCTGGGCTTGTC
TGCCTCTCCGGGATCGTATGTTTAAAGCCTTGTCCTGTGTTCCTTTGTCTGATGCTCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGGGGAGAGGGGGAGGCAGGAAGGACGCGGCAGGGCGGAAGCCTGTGACCTTACTTG
AACAGTTCCACTGGTGAGGCTGGAGAGAACGAACACACCACCTGTACATATCGCCCTCTT
CCCTCCCTGACGCTCGTGTAGTGTATAAGCTTCGTCAGGCGCCTCCCTTCCCGCCGATTC
CCTGAGAGCCACCTCTGCTGGAGGGTGGCAGGTAGAGCCCGCACCACTTGCATCCCTGAT
ACGCATTTGATGGGATTGGGGGAAGCAGCTTATCCCTATAGCTTTACCTTGCTTGGCTTG
GCTATAAAAAGTGCTTCTCCCCCTCTTGTCCCATTAGAGGACTCGGTTCCCCCATTCTTG
CTGCTTTGTCCCTCACCGACTCCTTGCAGGATCGATTCCTTTTAAAATGATCCTGAATCT
AGCTTTGCCTTGGAGACCCCAGTGGGTGCTGCTCCTGCCAGGTTCAAGCCTCTGTTTCAT
CTCCAACCCTCTCTGCCAGTTTGGCCCCCAAAAGCTTGGTGGCTCAAGACTGTTAGCCTG
GCAGATCCAGGGGTGACACCTCACTCCGGGAGAGGGAAGATCTTGGAACAGGCAGGATGC
CCGCCGCCGCTTTCAGCTGCCTCCTCGCTCACCTTCCCCGTTGGCCTCCCTGGGCTTGTC
TGCCTCTCCGGGATCGTATGTTTAAAGCCTTGTCCTGTGTTCCTTTGTCTGATGCTCATG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               219-338, - strand, RNAz p=0.612522
               

               
               476-595, + strand, RNAz p=0.900194

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               219-338, - strand, RNAz p=0.612522
               

               
               476-595, + strand, RNAz p=0.900194

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               561-618, + strand, RNAmicro p=0.984214
               

               
               248-340, + strand, RNAmicro p=0.965599

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               561-618, + strand, RNAmicro p=0.984214
               

               
               248-340, + strand, RNAmicro p=0.965599

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               22-718, gnl|bosTau2|chr25 (28296765-28296041)
               

               
               22-718, gnl|Hg17|chr7 (72160006-72160682)
               

               
               22-718, gnl|Mm7|chr5 (134349195-134348561)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-718, gnl|bosTau2|chr25 (28296765-28296041)
               

               
               22-718, gnl|Hg17|chr7 (72160006-72160682)
               

               
               22-718, gnl|Mm7|chr5 (134349195-134348561)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cag (0.151194)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)

	219-338, - strand, RNAz p=0.612522
	476-595, + strand, RNAz p=0.900194

	561-618, + strand, RNAmicro p=0.984214
	248-340, + strand, RNAmicro p=0.965599

	22-718, gnl\|bosTau2\|chr25 (28296765-28296041)
	22-718, gnl\|Hg17\|chr7 (72160006-72160682)
	22-718, gnl\|Mm7\|chr5 (134349195-134348561)