Non-Coding RNA Search

Ss1.1-rcad16b_i20.5

Sequence:


               
               AGCACCCTAGTCCCGGGGCTCCCAGGAGTTTGCACACCCAGGCCGCCGCCTCTCCTTCAG
TCTCCCCACCTGACACTGCCGTGAATCAGAGGAAACAGGGAAACTTCCGGCTGCCCCGCC
CGGCGCACGCTGACCGGAGGCCTTCTGTCTCTGCCCACACCTCCCTGGGCAGAGTGTTTA
AAGGTGCCAGAGCCTCTTCGCAGCCCACTGTGGGCAGGGGCTTCCCTCACCTCCCCAGGG
CGCGTGTGAAGGTGCCCACAGCTGGTGAGGGGCTGGAGGGCGGGAGGGGGGCAGTCATCT
GAAGAGCAGCTGCCCCTCCTGAGTGCCTCTGTGTGGTCCTGCCCAGCGGCCACCTTGGCC
ACCACCCTGAGCACAGGTGCCCCCTGGGGACCACGCCCTCCTCTTTGTTTCTGTAAGAAT
AACCAAAAGCATTTCAATGTGTTACCTTTACACATACAGACTCCAAAAAAACCCCCACAA
AAACCCGAAAACCAACACAAATCTTTATTTTTTAATTTAAAAGATATATGAAAAAGTATG
GGGAGAGTATTCATTATGGCAGGTGTCTATCTGTAAGAAAAAAATATATATATCTATATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCACCCTAGTCCCGGGGCTCCCAGGAGTTTGCACACCCAGGCCGCCGCCTCTCCTTCAG
TCTCCCCACCTGACACTGCCGTGAATCAGAGGAAACAGGGAAACTTCCGGCTGCCCCGCC
CGGCGCACGCTGACCGGAGGCCTTCTGTCTCTGCCCACACCTCCCTGGGCAGAGTGTTTA
AAGGTGCCAGAGCCTCTTCGCAGCCCACTGTGGGCAGGGGCTTCCCTCACCTCCCCAGGG
CGCGTGTGAAGGTGCCCACAGCTGGTGAGGGGCTGGAGGGCGGGAGGGGGGCAGTCATCT
GAAGAGCAGCTGCCCCTCCTGAGTGCCTCTGTGTGGTCCTGCCCAGCGGCCACCTTGGCC
ACCACCCTGAGCACAGGTGCCCCCTGGGGACCACGCCCTCCTCTTTGTTTCTGTAAGAAT
AACCAAAAGCATTTCAATGTGTTACCTTTACACATACAGACTCCAAAAAAACCCCCACAA
AAACCCGAAAACCAACACAAATCTTTATTTTTTAATTTAAAAGATATATGAAAAAGTATG
GGGAGAGTATTCATTATGGCAGGTGTCTATCTGTAAGAAAAAAATATATATATCTATATG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               86-294, - strand, RNAz p=0.998165
               

               
               387-498, - strand, RNAz p=0.811145
               

               
               460-559, - strand, RNAz p=0.886855

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-294, - strand, RNAz p=0.998165
               

               
               387-498, - strand, RNAz p=0.811145
               

               
               460-559, - strand, RNAz p=0.886855

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               21-203, - strand, RNAmicro p=0.900465

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               21-203, - strand, RNAmicro p=0.900465

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-593, gnl|bosTau2|chr19 (52564678-52565258)
               

               
               1-593, gnl|canFam2|chr9 (9870094-9869423)
               

               
               1-593, gnl|echTel1|scaffold_311891 (11663-12322)
               

               
               1-593, gnl|hg17|chr17 (68842089-68842792)
               

               
               1-593, gnl|Hg17|chr17 (68842905-68842252)
               

               
               1-593, gnl|loxAfr1|scaffold_1104 (127760-127052)
               

               
               1-593, gnl|mm7|chr11 (113885400-113886089)
               

               
               1-593, gnl|Mm7|chr11 (113886181-113885560)
               

               
               1-593, gnl|monDom2|scaffold_18 (29547636-29548461)
               

               
               1-593, gnl|oryCun1|scaffold_201456 (63316-62636)
               

               
               1-593, gnl|panTro1|chr19 (72218029-72218733)
               

               
               1-593, gnl|rheMac2|chr16 (68578729-68579430)
               

               
               1-593, gnl|rn3|chr10 (103433553-103434235)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-593, gnl|bosTau2|chr19 (52564678-52565258)
               

               
               1-593, gnl|canFam2|chr9 (9870094-9869423)
               

               
               1-593, gnl|echTel1|scaffold_311891 (11663-12322)
               

               
               1-593, gnl|hg17|chr17 (68842089-68842792)
               

               
               1-593, gnl|Hg17|chr17 (68842905-68842252)
               

               
               1-593, gnl|loxAfr1|scaffold_1104 (127760-127052)
               

               
               1-593, gnl|mm7|chr11 (113885400-113886089)
               

               
               1-593, gnl|Mm7|chr11 (113886181-113885560)
               

               
               1-593, gnl|monDom2|scaffold_18 (29547636-29548461)
               

               
               1-593, gnl|oryCun1|scaffold_201456 (63316-62636)
               

               
               1-593, gnl|panTro1|chr19 (72218029-72218733)
               

               
               1-593, gnl|rheMac2|chr16 (68578729-68579430)
               

               
               1-593, gnl|rn3|chr10 (103433553-103434235)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ece (0.229305)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)

	86-294, - strand, RNAz p=0.998165
	387-498, - strand, RNAz p=0.811145
	460-559, - strand, RNAz p=0.886855

	1-593, gnl\|bosTau2\|chr19 (52564678-52565258)
	1-593, gnl\|canFam2\|chr9 (9870094-9869423)
	1-593, gnl\|echTel1\|scaffold_311891 (11663-12322)
	1-593, gnl\|hg17\|chr17 (68842089-68842792)
	1-593, gnl\|Hg17\|chr17 (68842905-68842252)
	1-593, gnl\|loxAfr1\|scaffold_1104 (127760-127052)
	1-593, gnl\|mm7\|chr11 (113885400-113886089)
	1-593, gnl\|Mm7\|chr11 (113886181-113885560)
	1-593, gnl\|monDom2\|scaffold_18 (29547636-29548461)
	1-593, gnl\|oryCun1\|scaffold_201456 (63316-62636)
	1-593, gnl\|panTro1\|chr19 (72218029-72218733)
	1-593, gnl\|rheMac2\|chr16 (68578729-68579430)
	1-593, gnl\|rn3\|chr10 (103433553-103434235)

	ece (0.229305)
	eye (0.170503)
	cag (0.151194)
	nmm (0.132802)
	ese (0.126502)