Ss1.1-rcad25b_f13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCACACGGACTGCGTTCGATGCCTGGCCGTTCACCCCGATGGTGTGCGGGTAGCCTCAG GACAGACAGCCGGCGTGGATAAGGACGGAAAGCCCCTGCAGCCTGTGGTTCACGTCTGGG ACTCAGAGACGCTGCAGAAGTTGCAGGAGATCGGACTGGGGGCCTTCGAGCGGGGTGTGG GGGCCCTGGCCTTTTCCGTTGCGGATCAGGGTGCCTTCCTCTGCGTGGTGGATGATTCCA ATGAGCACATGCTGTCTGTGTGGGACTGCAGCCGGGGCACGAAGCTGGCTGAGATCAAGA GTACAAATGACTCAGTCCTGGCCGTTGGCTTCAGCCCTCGTGACAGCAGCTGCATTGTCA CCAGCGGGAAATCCCATGTCCACTTCTGGAACTGGAATGGTGGCGCCGGGGTTCCTGGGA ATGGGACCCTCACCAGGAAACAGGGTGTCTTTGGGAAATACAAGAAACCCAAGTTTATCC CCTGCTTTGTGTTCCTCCCGGATGGAGACATTCTCACTGGGGACTCAGAGGGGAACATTC TCACCTGGGGGCGGAGCCTCTCAGATTCCAGGACCCCAGGCAGGGGCGGGGCCAAAGAGA CCTACGGGATTGTGGCCCAGGCCCACGCTCACGAAGGGTCCATCTTCGCCCTGTGTCTCC GGCGGGACGGGACCGTGCTGAGTGGTGGTGGGCGGGACCGCCGGCTGGTCCAGTGGGGGC CCGGGTTGGTGGCCCTCCAGGAGGCTGAGATTCCGGAACACTTTGGGGCCGTGCGGGCCA TCGCAGAAGGGCCTGGCTCTGAGCTGCTGGTGGGGACCACGAAGAATGCGTTGCTGAGGG GAGATCTGGCTCAGGGCTTCTCCCCTGTAATCCAGGGTCACACGGATGAGCTCTGGGGGC TCTGCACGCATCCCTTCCAGAACCGATTCCTCACCTGTGGCCATGACCGGCAGCTCTGCC TGTGGGATGGGGAGGCCCATGCACTGGCCTGGAGCCTTGATCTCAAGGAAACTGGTCTCT GTGCCGACTTCCACCCCAGTGGTGCAGTTGTGGCTGTGGGACTGAATACGGGGAGGTGGC TGGTTTTGGACACAGAGACTCGGGAGATTGTGTCTGACATCACTGATGGCAACGAGCAGC TCTCAGTGGTCCGGTACAGCCCAGATGGGTTGTACCTGGCCATCGGTTCCCATGACAACA TGATCTACATCTATAGCGTTTCCAGTGATGGTGCCAAGTCCAGCCGCTTTGGCCGCTGTG TGGGTCACTCCAGCTTCATCACGCATCTTGACTGGTCCAAGGATGGGAACTTCATCATGT CCAATTCTGGGGACTATGAGATCCTTTACTGGGACGTGGCTGGAGGCTGTAAGCTGCTGA GGAATCGCTATGACAGCCGAGACCGGGAGTGGGCCACCTACACCTGCGTGCTGGGCTTTC ATGTCTATGGCGTGTGGCCGGATGGCTCTGATGGAACCGACATCAACTCCCTGTGCCGCT CCCACAATGAGCGCGTGGTGGCTGTGGCCGACGACTTCTGCAAAGTGCACCTCTTCCAGT ACCCGTGCGCGCGCGCCAAGGCGCCGAGCCTCGTGTACGGCGGTCACGGCAGCCACGTGA CCAGCGTCCGGTTCACGTACGACGACTCGCACCTCGTCTCGCTGGGCGGCAAGGACGCCA GCATCTTCCAGTGGCGAGTGCTGGGCGCTGGGAGCGCGGGGCAGGCGCCTGCCACGCCCT CTCGAACTCCCTCGCTGTCCCCCGCCTCCTCTCTCGACGTCTGACCGCTGCCCGACGGGA CCCACCGGCCCTGCAGCGTGGCCCCGCCCCGCCCAAGTTTCCCAGGACCCGGGCCGACCC AGTCCTAGACTTCGAGACATTCCCGAAAGCTCATTTCCCTGCAGGGGGCGAACGGCACCC CTGCACACACTGTAAAGACCCGCTGGCTGAGCCGGGCAGCCCCAGCCTGGGCCCTGACTC CCGCTACCTGCTGAGGGGCAATAAACCAAAAGCAAAGTCAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCACACGGACTGCGTTCGATGCCTGGCCGTTCACCCCGATGGTGTGCGGGTAGCCTCAG GACAGACAGCCGGCGTGGATAAGGACGGAAAGCCCCTGCAGCCTGTGGTTCACGTCTGGG ACTCAGAGACGCTGCAGAAGTTGCAGGAGATCGGACTGGGGGCCTTCGAGCGGGGTGTGG GGGCCCTGGCCTTTTCCGTTGCGGATCAGGGTGCCTTCCTCTGCGTGGTGGATGATTCCA ATGAGCACATGCTGTCTGTGTGGGACTGCAGCCGGGGCACGAAGCTGGCTGAGATCAAGA GTACAAATGACTCAGTCCTGGCCGTTGGCTTCAGCCCTCGTGACAGCAGCTGCATTGTCA CCAGCGGGAAATCCCATGTCCACTTCTGGAACTGGAATGGTGGCGCCGGGGTTCCTGGGA ATGGGACCCTCACCAGGAAACAGGGTGTCTTTGGGAAATACAAGAAACCCAAGTTTATCC CCTGCTTTGTGTTCCTCCCGGATGGAGACATTCTCACTGGGGACTCAGAGGGGAACATTC TCACCTGGGGGCGGAGCCTCTCAGATTCCAGGACCCCAGGCAGGGGCGGGGCCAAAGAGA CCTACGGGATTGTGGCCCAGGCCCACGCTCACGAAGGGTCCATCTTCGCCCTGTGTCTCC GGCGGGACGGGACCGTGCTGAGTGGTGGTGGGCGGGACCGCCGGCTGGTCCAGTGGGGGC CCGGGTTGGTGGCCCTCCAGGAGGCTGAGATTCCGGAACACTTTGGGGCCGTGCGGGCCA TCGCAGAAGGGCCTGGCTCTGAGCTGCTGGTGGGGACCACGAAGAATGCGTTGCTGAGGG GAGATCTGGCTCAGGGCTTCTCCCCTGTAATCCAGGGTCACACGGATGAGCTCTGGGGGC TCTGCACGCATCCCTTCCAGAACCGATTCCTCACCTGTGGCCATGACCGGCAGCTCTGCC TGTGGGATGGGGAGGCCCATGCACTGGCCTGGAGCCTTGATCTCAAGGAAACTGGTCTCT GTGCCGACTTCCACCCCAGTGGTGCAGTTGTGGCTGTGGGACTGAATACGGGGAGGTGGC TGGTTTTGGACACAGAGACTCGGGAGATTGTGTCTGACATCACTGATGGCAACGAGCAGC TCTCAGTGGTCCGGTACAGCCCAGATGGGTTGTACCTGGCCATCGGTTCCCATGACAACA TGATCTACATCTATAGCGTTTCCAGTGATGGTGCCAAGTCCAGCCGCTTTGGCCGCTGTG TGGGTCACTCCAGCTTCATCACGCATCTTGACTGGTCCAAGGATGGGAACTTCATCATGT CCAATTCTGGGGACTATGAGATCCTTTACTGGGACGTGGCTGGAGGCTGTAAGCTGCTGA GGAATCGCTATGACAGCCGAGACCGGGAGTGGGCCACCTACACCTGCGTGCTGGGCTTTC ATGTCTATGGCGTGTGGCCGGATGGCTCTGATGGAACCGACATCAACTCCCTGTGCCGCT CCCACAATGAGCGCGTGGTGGCTGTGGCCGACGACTTCTGCAAAGTGCACCTCTTCCAGT ACCCGTGCGCGCGCGCCAAGGCGCCGAGCCTCGTGTACGGCGGTCACGGCAGCCACGTGA CCAGCGTCCGGTTCACGTACGACGACTCGCACCTCGTCTCGCTGGGCGGCAAGGACGCCA GCATCTTCCAGTGGCGAGTGCTGGGCGCTGGGAGCGCGGGGCAGGCGCCTGCCACGCCCT CTCGAACTCCCTCGCTGTCCCCCGCCTCCTCTCTCGACGTCTGACCGCTGCCCGACGGGA CCCACCGGCCCTGCAGCGTGGCCCCGCCCCGCCCAAGTTTCCCAGGACCCGGGCCGACCC AGTCCTAGACTTCGAGACATTCCCGAAAGCTCATTTCCCTGCAGGGGGCGAACGGCACCC CTGCACACACTGTAAAGACCCGCTGGCTGAGCCGGGCAGCCCCAGCCTGGGCCCTGACTC CCGCTACCTGCTGAGGGGCAATAAACCAAAAGCAAAGTCAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 91-204, gnl|bosTau2|chr29 (32057843-32057730) | |
| 91-204, gnl|canFam2|chr18 (57058340-57058198) | |
| 91-204, gnl|danRer3|chrNA (20182798-20182932) | |
| 91-204, gnl|dasNov1|scaffold_3087 (105145-105000) | |
| 91-204, gnl|fr1|chrUn (94703887-94703992) | |
| 91-204, gnl|hg17|chr11 (62132570-62132712) | |
| 91-204, gnl|Hg17|chr11 (62132702-62132589) | |
| 91-204, gnl|loxAfr1|scaffold_4082 (97632-97758) | |
| 91-204, gnl|mm7|chr19 (8614536-8614391) | |
| 91-204, gnl|Mm7|chr19 (8614402-8614515) | |
| 91-204, gnl|monDom2|scaffold_150 (867597-867723) | |
| 91-204, gnl|oryCun1|scaffold_191341 (7862-8007) | |
| 91-204, gnl|panTro1|chr9 (63128250-63128392) | |
| 91-204, gnl|rheMac2|chr14 (11484286-11484141) | |
| 91-204, gnl|rn3|chr1 (211769462-211769317) | |
| 91-204, gnl|tetNig1|chr17 (7915235-7915109) | |
| 298-455, gnl|bosTau2|chr29 (32057044-32056887) | |
| 298-455, gnl|Hg17|chr11 (62131871-62131714) | |
| 298-455, gnl|Mm7|chr19 (8616464-8616621) | |
| 591-690, gnl|bosTau2|chr29 (32056173-32056073) | |
| 591-690, gnl|canFam2|chr18 (57060032-57059897) | |
| 591-690, gnl|danRer3|chr15 (35135644-35135747) | |
| 591-690, gnl|dasNov1|scaffold_251897 (254-119) | |
| 591-690, gnl|echTel1|scaffold_304546 (4083-4218) | |
| 591-690, gnl|fr1|chrUn (94702656-94702790) | |
| 591-690, gnl|hg17|chr11 (62130154-62130289) | |
| 591-690, gnl|Hg17|chr11 (62130270-62130129) | |
| 591-690, gnl|mm7|chr19 (8617401-8617267) | |
| 591-690, gnl|Mm7|chr19 (8617283-8617383) | |
| 591-690, gnl|monDom2|scaffold_150 (865766-865878) | |
| 591-690, gnl|oryCun1|scaffold_210230 (75475-75349) | |
| 591-690, gnl|panTro1|chr9 (63125831-63125966) | |
| 591-690, gnl|rheMac2|chr14 (11486883-11486748) | |
| 591-690, gnl|rn3|chr1 (211772412-211772278) | |
| 591-690, gnl|tetNig1|chr17 (7916461-7916371) | |
| 871-1025, gnl|bosTau2|chr29 (32055938-32055783) | |
| 871-1025, gnl|Hg17|chr11 (62129826-62129673) | |
| 871-1025, gnl|Mm7|chr19 (8617720-8617872) | |
| 1163-1263, gnl|bosTau2|chr29 (32054583-32054483) | |
| 1163-1263, gnl|canFam2|chr18 (57062023-57061908) | |
| 1163-1263, gnl|danRer3|chrNA (20167028-20167137) | |
| 1163-1263, gnl|dasNov1|scaffold_3087 (108697-108582) | |
| 1163-1263, gnl|echTel1|scaffold_282918 (38330-38444) | |
| 1163-1263, gnl|fr1|chrUn (94701611-94701726) | |
| 1163-1263, gnl|hg17|chr11 (62127982-62128097) | |
| 1163-1263, gnl|Hg17|chr11 (62128091-62127991) | |
| 1163-1263, gnl|loxAfr1|scaffold_4082 (71637-71747) | |
| 1163-1263, gnl|mm7|chr19 (8619459-8619344) | |
| 1163-1263, gnl|Mm7|chr19 (8619348-8619448) | |
| 1163-1263, gnl|monDom2|scaffold_150 (864688-864803) | |
| 1163-1263, gnl|oryCun1|scaffold_191341 (4368-4483) | |
| 1163-1263, gnl|panTro1|chr9 (63123654-63123769) | |
| 1163-1263, gnl|rheMac2|chr14 (11489053-11488938) | |
| 1163-1263, gnl|rn3|chr1 (211774353-211774238) | |
| 1163-1263, gnl|tetNig1|chr17 (7917515-7917400) | |
| 1575-2019, gnl|bosTau2|chr29 (32053216-32052785) | |
| 1575-2019, gnl|Hg17|chr11 (62126732-62126268) | |
| 1575-2019, gnl|Mm7|chr19 (8621286-8621743) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 91-204, gnl|bosTau2|chr29 (32057843-32057730) | |
| 91-204, gnl|canFam2|chr18 (57058340-57058198) | |
| 91-204, gnl|danRer3|chrNA (20182798-20182932) | |
| 91-204, gnl|dasNov1|scaffold_3087 (105145-105000) | |
| 91-204, gnl|fr1|chrUn (94703887-94703992) | |
| 91-204, gnl|hg17|chr11 (62132570-62132712) | |
| 91-204, gnl|Hg17|chr11 (62132702-62132589) | |
| 91-204, gnl|loxAfr1|scaffold_4082 (97632-97758) | |
| 91-204, gnl|mm7|chr19 (8614536-8614391) | |
| 91-204, gnl|Mm7|chr19 (8614402-8614515) | |
| 91-204, gnl|monDom2|scaffold_150 (867597-867723) | |
| 91-204, gnl|oryCun1|scaffold_191341 (7862-8007) | |
| 91-204, gnl|panTro1|chr9 (63128250-63128392) | |
| 91-204, gnl|rheMac2|chr14 (11484286-11484141) | |
| 91-204, gnl|rn3|chr1 (211769462-211769317) | |
| 91-204, gnl|tetNig1|chr17 (7915235-7915109) | |
| 298-455, gnl|bosTau2|chr29 (32057044-32056887) | |
| 298-455, gnl|Hg17|chr11 (62131871-62131714) | |
| 298-455, gnl|Mm7|chr19 (8616464-8616621) | |
| 591-690, gnl|bosTau2|chr29 (32056173-32056073) | |
| 591-690, gnl|canFam2|chr18 (57060032-57059897) | |
| 591-690, gnl|danRer3|chr15 (35135644-35135747) | |
| 591-690, gnl|dasNov1|scaffold_251897 (254-119) | |
| 591-690, gnl|echTel1|scaffold_304546 (4083-4218) | |
| 591-690, gnl|fr1|chrUn (94702656-94702790) | |
| 591-690, gnl|hg17|chr11 (62130154-62130289) | |
| 591-690, gnl|Hg17|chr11 (62130270-62130129) | |
| 591-690, gnl|mm7|chr19 (8617401-8617267) | |
| 591-690, gnl|Mm7|chr19 (8617283-8617383) | |
| 591-690, gnl|monDom2|scaffold_150 (865766-865878) | |
| 591-690, gnl|oryCun1|scaffold_210230 (75475-75349) | |
| 591-690, gnl|panTro1|chr9 (63125831-63125966) | |
| 591-690, gnl|rheMac2|chr14 (11486883-11486748) | |
| 591-690, gnl|rn3|chr1 (211772412-211772278) | |
| 591-690, gnl|tetNig1|chr17 (7916461-7916371) | |
| 871-1025, gnl|bosTau2|chr29 (32055938-32055783) | |
| 871-1025, gnl|Hg17|chr11 (62129826-62129673) | |
| 871-1025, gnl|Mm7|chr19 (8617720-8617872) | |
| 1163-1263, gnl|bosTau2|chr29 (32054583-32054483) | |
| 1163-1263, gnl|canFam2|chr18 (57062023-57061908) | |
| 1163-1263, gnl|danRer3|chrNA (20167028-20167137) | |
| 1163-1263, gnl|dasNov1|scaffold_3087 (108697-108582) | |
| 1163-1263, gnl|echTel1|scaffold_282918 (38330-38444) | |
| 1163-1263, gnl|fr1|chrUn (94701611-94701726) | |
| 1163-1263, gnl|hg17|chr11 (62127982-62128097) | |
| 1163-1263, gnl|Hg17|chr11 (62128091-62127991) | |
| 1163-1263, gnl|loxAfr1|scaffold_4082 (71637-71747) | |
| 1163-1263, gnl|mm7|chr19 (8619459-8619344) | |
| 1163-1263, gnl|Mm7|chr19 (8619348-8619448) | |
| 1163-1263, gnl|monDom2|scaffold_150 (864688-864803) | |
| 1163-1263, gnl|oryCun1|scaffold_191341 (4368-4483) | |
| 1163-1263, gnl|panTro1|chr9 (63123654-63123769) | |
| 1163-1263, gnl|rheMac2|chr14 (11489053-11488938) | |
| 1163-1263, gnl|rn3|chr1 (211774353-211774238) | |
| 1163-1263, gnl|tetNig1|chr17 (7917515-7917400) | |
| 1575-2019, gnl|bosTau2|chr29 (32053216-32052785) | |
| 1575-2019, gnl|Hg17|chr11 (62126732-62126268) | |
| 1575-2019, gnl|Mm7|chr19 (8621286-8621743) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| cty (0.5204) | |
| elu (0.385356) | |
| lnt (0.284616) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| cag (0.151194) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cly (0.120642) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.5204) | |
| elu (0.385356) | |
| lnt (0.284616) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| cag (0.151194) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cly (0.120642) |