Non-Coding RNA Search

Ss1.1-rcad31b_h15.5

Sequence:


               
               TGATAAACCAAAGTGGAGTGAATAATCGTGTTTTAATTTAGGTAGGCTAGCTTGGGATAC
CTTTTTAAAAGAATAAGACAAAACCAGATATAAAGATGTCTGGCAAGATTAGAATCAGAC
TAGGTGATTTGCTTCTAAAAATTAGTTTCAGTGAGTCCCAGGGACTAATTAAGGTTTACT
TTAAAAGCGTCCGCCTTGGTACGCAGGCACCTCCTGCATGCTGTGCATGTTATTGGGACT
CGTATATAGGAAATGGTATGTGAGGCTCCAAGCAGGACTCGGTGATGCCATTCTCCTTGT
CTGTGATCTTCATCACTAGACCCAGCAACCCTGCCCCCCCGCCACCTTCCCCGCACCTTT
TGTTTACAGAGGCAGGTGGGCCTCTGGCCATAGAATATATAAAATCTTGGGCTATCAGAG
GAGTCACCTCTTTGCCTGCTCTTTCCAGTTCCTTCCTTGAATTCTCTCTCCTGTTAGTGA
TGCTGGGAAACTCATAGGACAGGCGAAGTAACTATTTAAAACCTTGTAACTGGGGCCTTG
CTCCCACCCCTTTTTGGGCTGGTCCTCCTTTCCTCTTCCTTCATGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATAAACCAAAGTGGAGTGAATAATCGTGTTTTAATTTAGGTAGGCTAGCTTGGGATAC
CTTTTTAAAAGAATAAGACAAAACCAGATATAAAGATGTCTGGCAAGATTAGAATCAGAC
TAGGTGATTTGCTTCTAAAAATTAGTTTCAGTGAGTCCCAGGGACTAATTAAGGTTTACT
TTAAAAGCGTCCGCCTTGGTACGCAGGCACCTCCTGCATGCTGTGCATGTTATTGGGACT
CGTATATAGGAAATGGTATGTGAGGCTCCAAGCAGGACTCGGTGATGCCATTCTCCTTGT
CTGTGATCTTCATCACTAGACCCAGCAACCCTGCCCCCCCGCCACCTTCCCCGCACCTTT
TGTTTACAGAGGCAGGTGGGCCTCTGGCCATAGAATATATAAAATCTTGGGCTATCAGAG
GAGTCACCTCTTTGCCTGCTCTTTCCAGTTCCTTCCTTGAATTCTCTCTCCTGTTAGTGA
TGCTGGGAAACTCATAGGACAGGCGAAGTAACTATTTAAAACCTTGTAACTGGGGCCTTG
CTCCCACCCCTTTTTGGGCTGGTCCTCCTTTCCTCTTCCTTCATGCCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               125-469, + strand, RNAz p=0.972514
               

               
               149-404, - strand, RNAz p=0.843349

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               125-469, + strand, RNAz p=0.972514
               

               
               149-404, - strand, RNAz p=0.843349

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002657, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002657, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               6-540, gnl|bosTau2|chr13 (42347184-42347720)
               

               
               6-540, gnl|canFam2|chr24 (24566163-24564857)
               

               
               6-540, gnl|dasNov1|scaffold_24400 (12716-11374)
               

               
               6-540, gnl|echTel1|scaffold_316323 (16301-15096)
               

               
               6-540, gnl|Hg17|chr20 (30246007-30245474)
               

               
               6-540, gnl|hg17|chr4 (85524334-85525667)
               

               
               6-540, gnl|loxAfr1|scaffold_27064 (16947-18276)
               

               
               6-540, gnl|mm7|chr2 (152970630-152969404)
               

               
               6-540, gnl|Mm7|chr2 (152970481-152970008)
               

               
               6-540, gnl|monDom2|scaffold_38 (861450-862992)
               

               
               6-540, gnl|oryCun1|scaffold_191471 (18987-17724)
               

               
               6-540, gnl|panTro1|chr3 (48160550-48159217)
               

               
               6-540, gnl|rheMac2|chr10 (32381632-32382982)
               

               
               6-540, gnl|rn3|chr3 (143486528-143485284)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-540, gnl|bosTau2|chr13 (42347184-42347720)
               

               
               6-540, gnl|canFam2|chr24 (24566163-24564857)
               

               
               6-540, gnl|dasNov1|scaffold_24400 (12716-11374)
               

               
               6-540, gnl|echTel1|scaffold_316323 (16301-15096)
               

               
               6-540, gnl|Hg17|chr20 (30246007-30245474)
               

               
               6-540, gnl|hg17|chr4 (85524334-85525667)
               

               
               6-540, gnl|loxAfr1|scaffold_27064 (16947-18276)
               

               
               6-540, gnl|mm7|chr2 (152970630-152969404)
               

               
               6-540, gnl|Mm7|chr2 (152970481-152970008)
               

               
               6-540, gnl|monDom2|scaffold_38 (861450-862992)
               

               
               6-540, gnl|oryCun1|scaffold_191471 (18987-17724)
               

               
               6-540, gnl|panTro1|chr3 (48160550-48159217)
               

               
               6-540, gnl|rheMac2|chr10 (32381632-32382982)
               

               
               6-540, gnl|rn3|chr3 (143486528-143485284)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cag (0.302389)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.302389)

	125-469, + strand, RNAz p=0.972514
	149-404, - strand, RNAz p=0.843349

	6-540, gnl\|bosTau2\|chr13 (42347184-42347720)
	6-540, gnl\|canFam2\|chr24 (24566163-24564857)
	6-540, gnl\|dasNov1\|scaffold_24400 (12716-11374)
	6-540, gnl\|echTel1\|scaffold_316323 (16301-15096)
	6-540, gnl\|Hg17\|chr20 (30246007-30245474)
	6-540, gnl\|hg17\|chr4 (85524334-85525667)
	6-540, gnl\|loxAfr1\|scaffold_27064 (16947-18276)
	6-540, gnl\|mm7\|chr2 (152970630-152969404)
	6-540, gnl\|Mm7\|chr2 (152970481-152970008)
	6-540, gnl\|monDom2\|scaffold_38 (861450-862992)
	6-540, gnl\|oryCun1\|scaffold_191471 (18987-17724)
	6-540, gnl\|panTro1\|chr3 (48160550-48159217)
	6-540, gnl\|rheMac2\|chr10 (32381632-32382982)
	6-540, gnl\|rn3\|chr3 (143486528-143485284)