Non-Coding RNA Search

Ss1.1-rcad32b_a15.5

Sequence:


               
               GTACCCATTTGAGTGGGACTTGCCTGCTCCCTTCACACACTGTCCTCTCCTGTTCTCCAG
CATGTTGCATCTGTGTTTCTCCAGAGGCTTCTGGATGGCGGCTCTGACCGTGATGCTGGT
GGTGCTGAGCCCTCCCTTGGCTTTGGCCAGGGACACCCCACCGCATTTCTTGCTTCTGGG
GAAACACGAGTGTCATTTCTTCAACGGGACGGAGCGGGTGAGGTTTCTGGACAGATACTT
CTATAACCGAGAGGAGTACGTGCGCTTCGACAGCGACGTGGGCGAGTTCCGGGAAGTGAC
CGAATTTGGGCGGCCAGACGCCAAGTACTGGAATAGCCTGAAGGACTTCCTGGAGCAGAA
GCGGACTGCAGTGGACAGGTACTGCAGACACAACTACGAGATCTTAGAGACCTTCCTCGT
GCCGCGGCGAGCTGAGCCCACAGTGACGGTGTACCCTGCAAAGACCCAGCCCCTGCAGCA
CCACAACCTCCTGGTCTGCTCTGTGACCGGGTTCTACCCAGGCCACGTGGAGGTCAGGTG
GTTCCGGAATGGCCAGGAAGAGGCGGCGGGGGTGGTCTCCACAGGCCTGATCCCTAATGG
AGACTGGACCTTCCAGACCATGGTGATGCTTGAAACGGTTCCTCAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTACCCATTTGAGTGGGACTTGCCTGCTCCCTTCACACACTGTCCTCTCCTGTTCTCCAG
CATGTTGCATCTGTGTTTCTCCAGAGGCTTCTGGATGGCGGCTCTGACCGTGATGCTGGT
GGTGCTGAGCCCTCCCTTGGCTTTGGCCAGGGACACCCCACCGCATTTCTTGCTTCTGGG
GAAACACGAGTGTCATTTCTTCAACGGGACGGAGCGGGTGAGGTTTCTGGACAGATACTT
CTATAACCGAGAGGAGTACGTGCGCTTCGACAGCGACGTGGGCGAGTTCCGGGAAGTGAC
CGAATTTGGGCGGCCAGACGCCAAGTACTGGAATAGCCTGAAGGACTTCCTGGAGCAGAA
GCGGACTGCAGTGGACAGGTACTGCAGACACAACTACGAGATCTTAGAGACCTTCCTCGT
GCCGCGGCGAGCTGAGCCCACAGTGACGGTGTACCCTGCAAAGACCCAGCCCCTGCAGCA
CCACAACCTCCTGGTCTGCTCTGTGACCGGGTTCTACCCAGGCCACGTGGAGGTCAGGTG
GTTCCGGAATGGCCAGGAAGAGGCGGCGGGGGTGGTCTCCACAGGCCTGATCCCTAATGG
AGACTGGACCTTCCAGACCATGGTGATGCTTGAAACGGTTCCTCAGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57281689|dbj|BAD86586.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57281689|dbj|BAD86586.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               531-648, + strand, RNAz p=0.720293

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               531-648, + strand, RNAz p=0.720293

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-161, gnl|bosTau2|chr23 (21236049-21236209)
               

               
               1-161, gnl|canFam2|chr12 (5254003-5254141)
               

               
               1-161, gnl|dasNov1|scaffold_23750 (14255-14386)
               

               
               1-161, gnl|echTel1|scaffold_103957 (609-463)
               

               
               1-161, gnl|hg17|chr6 (32665390-32665536)
               

               
               1-161, gnl|Hg17|chr6 (32665557-32665398)
               

               
               1-161, gnl|loxAfr1|scaffold_36898 (7532-7395)
               

               
               1-161, gnl|mm7|chr17 (32383382-32383244)
               

               
               1-161, gnl|Mm7|chr17 (32383230-32383372)
               

               
               1-161, gnl|monDom2|scaffold_42 (16267144-16266995)
               

               
               1-161, gnl|oryCun1|scaffold_173411 (15197-15065)
               

               
               1-161, gnl|panTro1|chr5 (33118451-33118597)
               

               
               1-161, gnl|rheMac2|chr4 (32322304-32322450)
               

               
               1-161, gnl|rn3|chr20 (4681120-4681258)
               


               
               434-648, gnl|bosTau2|chr23 (21244789-21245003)
               

               
               434-648, gnl|Hg17|chr6 (32657591-32657377)
               

               
               434-648, gnl|Mm7|chr17 (32391497-32391711)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-161, gnl|bosTau2|chr23 (21236049-21236209)
               

               
               1-161, gnl|canFam2|chr12 (5254003-5254141)
               

               
               1-161, gnl|dasNov1|scaffold_23750 (14255-14386)
               

               
               1-161, gnl|echTel1|scaffold_103957 (609-463)
               

               
               1-161, gnl|hg17|chr6 (32665390-32665536)
               

               
               1-161, gnl|Hg17|chr6 (32665557-32665398)
               

               
               1-161, gnl|loxAfr1|scaffold_36898 (7532-7395)
               

               
               1-161, gnl|mm7|chr17 (32383382-32383244)
               

               
               1-161, gnl|Mm7|chr17 (32383230-32383372)
               

               
               1-161, gnl|monDom2|scaffold_42 (16267144-16266995)
               

               
               1-161, gnl|oryCun1|scaffold_173411 (15197-15065)
               

               
               1-161, gnl|panTro1|chr5 (33118451-33118597)
               

               
               1-161, gnl|rheMac2|chr4 (32322304-32322450)
               

               
               1-161, gnl|rn3|chr20 (4681120-4681258)
               


               
               434-648, gnl|bosTau2|chr23 (21244789-21245003)
               

               
               434-648, gnl|Hg17|chr6 (32657591-32657377)
               

               
               434-648, gnl|Mm7|chr17 (32391497-32391711)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cag (1.05836)
               

               
               clu (0.598229)
               

               
               cty (0.31224)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (1.05836)
               

               
               clu (0.598229)
               

               
               cty (0.31224)
               

               
               jej (0.0989218)

	1-161, gnl\|bosTau2\|chr23 (21236049-21236209)
	1-161, gnl\|canFam2\|chr12 (5254003-5254141)
	1-161, gnl\|dasNov1\|scaffold_23750 (14255-14386)
	1-161, gnl\|echTel1\|scaffold_103957 (609-463)
	1-161, gnl\|hg17\|chr6 (32665390-32665536)
	1-161, gnl\|Hg17\|chr6 (32665557-32665398)
	1-161, gnl\|loxAfr1\|scaffold_36898 (7532-7395)
	1-161, gnl\|mm7\|chr17 (32383382-32383244)
	1-161, gnl\|Mm7\|chr17 (32383230-32383372)
	1-161, gnl\|monDom2\|scaffold_42 (16267144-16266995)
	1-161, gnl\|oryCun1\|scaffold_173411 (15197-15065)
	1-161, gnl\|panTro1\|chr5 (33118451-33118597)
	1-161, gnl\|rheMac2\|chr4 (32322304-32322450)
	1-161, gnl\|rn3\|chr20 (4681120-4681258)

	434-648, gnl\|bosTau2\|chr23 (21244789-21245003)
	434-648, gnl\|Hg17\|chr6 (32657591-32657377)
	434-648, gnl\|Mm7\|chr17 (32391497-32391711)