Non-Coding RNA Search

Ss1.1-rcad33b_a7.5.5

Sequence:


               
               GGCTGAGGAGGCCGCGTCCCAGGAGGAGTGTCCCCACCATGGCCTGGACGGTGCTTCTGA
TCGGGCTCCTCGCTGTCGGCTCAGGGGTGGATTCTCAGACTGTGATCCAGGAGCCGGCGA
TGTCAGTGTCTCCTGGAGGGACCGTCACACTCACCTGTGCCTTTAGCTCTGGGTCAGTCA
CTACTAGTAACTACCCCAGCTGGTTCCAGCAGACACCAGGCCAGCCTCCCCGACAGCTGA
TCTACAGCACAAACAACCGCCCGACTGGGGTCCCCAGTCGCTTCTCTGGAGCCATCTCTG
GGAACAAAGCCGCCCTCACCATCACGGGGGCCCAGGCTGAGGACGAGGCCGACTATTTCT
GTGCTCTGTATA------------TTCCCTTCGGCGGTGGGACCCATCTGACCGTCCTCG
GTCAGCCCAAGGCCGCTCCCACGGTCAACCTCTTCCCGCCCTCCTCTGAGGAGCTCGGCA
CCAACAAGGCCACCCTGGTGTGTCTAATAAGTGACTTCTACCCGGGCGCCGTGACGGTGA
CCTGGAAGGCAGGCGGCACCACCGTCACCCAGGGCGTGGAGACCACCAAGCCCTCGAAAC
AGAGCAACAACAAGTACGCGGCCAGCAGCTACCTGGCCCTGTCCGCCAGTGACTGGAAAT
CTTCCAGCGGCTTCACCTGCCAGGTCACCCACGAGGGGACCATTGTGGAGAAGACAGTGA
CGCCCTCCGAGTGCGCCTAGGTCCCTGGGCCCCCACCCTCAGGGGCCTGGAGCCACAGGA
CCCCCGCGAGGGTCTCCCCGCGACCCTGGTCCAGCCCAGCCCTTCCTCCTGCACCTGTCA
ACTCCCAATAAACCGTCCTCCTTGTCATTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGAGGAGGCCGCGTCCCAGGAGGAGTGTCCCCACCATGGCCTGGACGGTGCTTCTGA
TCGGGCTCCTCGCTGTCGGCTCAGGGGTGGATTCTCAGACTGTGATCCAGGAGCCGGCGA
TGTCAGTGTCTCCTGGAGGGACCGTCACACTCACCTGTGCCTTTAGCTCTGGGTCAGTCA
CTACTAGTAACTACCCCAGCTGGTTCCAGCAGACACCAGGCCAGCCTCCCCGACAGCTGA
TCTACAGCACAAACAACCGCCCGACTGGGGTCCCCAGTCGCTTCTCTGGAGCCATCTCTG
GGAACAAAGCCGCCCTCACCATCACGGGGGCCCAGGCTGAGGACGAGGCCGACTATTTCT
GTGCTCTGTATA------------TTCCCTTCGGCGGTGGGACCCATCTGACCGTCCTCG
GTCAGCCCAAGGCCGCTCCCACGGTCAACCTCTTCCCGCCCTCCTCTGAGGAGCTCGGCA
CCAACAAGGCCACCCTGGTGTGTCTAATAAGTGACTTCTACCCGGGCGCCGTGACGGTGA
CCTGGAAGGCAGGCGGCACCACCGTCACCCAGGGCGTGGAGACCACCAAGCCCTCGAAAC
AGAGCAACAACAAGTACGCGGCCAGCAGCTACCTGGCCCTGTCCGCCAGTGACTGGAAAT
CTTCCAGCGGCTTCACCTGCCAGGTCACCCACGAGGGGACCATTGTGGAGAAGACAGTGA
CGCCCTCCGAGTGCGCCTAGGTCCCTGGGCCCCCACCCTCAGGGGCCTGGAGCCACAGGA
CCCCCGCGAGGGTCTCCCCGCGACCCTGGTCCAGCCCAGCCCTTCCTCCTGCACCTGTCA
ACTCCCAATAAACCGTCCTCCTTGTCATTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|164511|gb|AAA03572.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|164511|gb|AAA03572.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               690-841, - strand, RNAz p=0.870014

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               690-841, - strand, RNAz p=0.870014

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               410-863, gnl|bosTau2|chr17 (45644103-45644550)
               

               
               410-863, gnl|Hg17|chr22 (22240325-22239866)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               410-863, gnl|bosTau2|chr17 (45644103-45644550)
               

               
               410-863, gnl|Hg17|chr22 (22240325-22239866)

Expressed library(ies): 25 entry(ies)

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Expressed library(ies): 25 entry(ies)

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               csp (33.3656)
               

               
               col (23.791)
               

               
               cly (22.56)
               

               
               duo (15.0337)
               

               
               cag (12.8515)
               

               
               ill (9.13082)
               

               
               cga (7.81468)
               

               
               lnt (6.11925)
               

               
               clu (4.06796)
               

               
               mcp (3.92491)
               

               
               jej (3.56118)
               

               
               cje (3.30469)
               

               
               cbr (2.94343)
               

               
               med (0.930016)
               

               
               cli (0.611247)
               

               
               cov (0.528611)
               

               
               cty (0.5204)
               

               
               mas (0.42061)
               

               
               pty (0.285429)
               

               
               cbl (0.229595)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               lin (0.145603)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (33.3656)
               

               
               col (23.791)
               

               
               cly (22.56)
               

               
               duo (15.0337)
               

               
               cag (12.8515)
               

               
               ill (9.13082)
               

               
               cga (7.81468)
               

               
               lnt (6.11925)
               

               
               clu (4.06796)
               

               
               mcp (3.92491)
               

               
               jej (3.56118)
               

               
               cje (3.30469)
               

               
               cbr (2.94343)
               

               
               med (0.930016)
               

               
               cli (0.611247)
               

               
               cov (0.528611)
               

               
               cty (0.5204)
               

               
               mas (0.42061)
               

               
               pty (0.285429)
               

               
               cbl (0.229595)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               lin (0.145603)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	410-863, gnl\|bosTau2\|chr17 (45644103-45644550)
	410-863, gnl\|Hg17\|chr22 (22240325-22239866)

	csp (33.3656)
	col (23.791)
	cly (22.56)
	duo (15.0337)
	cag (12.8515)
	ill (9.13082)
	cga (7.81468)
	lnt (6.11925)
	clu (4.06796)
	mcp (3.92491)
	jej (3.56118)
	cje (3.30469)
	cbr (2.94343)
	med (0.930016)
	cli (0.611247)
	cov (0.528611)
	cty (0.5204)
	mas (0.42061)
	pty (0.285429)
	cbl (0.229595)
	cmu (0.186393)
	fty (0.17584)
	lin (0.145603)
	jca (0.11396)
	nbm (0.0993246)