Non-Coding RNA Search

Ss1.1-rcad33b_k19.5

Sequence:


               
               CCTGGAGCCAGTAAATATTAGTTTAATCCCCACTTCGCCCCAGCCACTGGGCCCTTCTGC
CTCCTCATTCCCCCACCCCCATCCCCAGCCCAGATGTCTGCCAGACCCGCGGCAGTCGGC
AGTCAGCTCTCCCGCGGGGCCTGTGGTTTCCGGCCACCAGCTTCCTGCCCCTAAAGATAC
CCCATTTCCTTGCTTCATGTATCAGCTTACCATCTCCCACGAGATTTTTTTTCGCCCAAA
CCCCAAATAAATCCCCTGCGTTTTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGAGCCAGTAAATATTAGTTTAATCCCCACTTCGCCCCAGCCACTGGGCCCTTCTGC
CTCCTCATTCCCCCACCCCCATCCCCAGCCCAGATGTCTGCCAGACCCGCGGCAGTCGGC
AGTCAGCTCTCCCGCGGGGCCTGTGGTTTCCGGCCACCAGCTTCCTGCCCCTAAAGATAC
CCCATTTCCTTGCTTCATGTATCAGCTTACCATCTCCCACGAGATTTTTTTTCGCCCAAA
CCCCAAATAAATCCCCTGCGTTTTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-231, - strand, RNAz p=0.978008

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-231, - strand, RNAz p=0.978008

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-271, gnl|bosTau2|chr18 (48399144-48399393)
               

               
               1-271, gnl|canFam2|chr1 (110018613-110018186)
               

               
               1-271, gnl|echTel1|scaffold_295188 (2755-3138)
               

               
               1-271, gnl|hg17|chr19 (54535221-54535616)
               

               
               1-271, gnl|Hg17|chr19 (54535452-54535675)
               

               
               1-271, gnl|mm7|chr7 (41409772-41409410)
               

               
               1-271, gnl|Mm7|chr7 (41409593-41409341)
               

               
               1-271, gnl|monDom2|scaffold_105 (4346308-4346659)
               

               
               1-271, gnl|oryCun1|scaffold_168603 (4166-3835)
               

               
               1-271, gnl|panTro1|chr20 (51896916-51897309)
               

               
               1-271, gnl|rheMac2|chr19 (55587602-55587973)
               

               
               1-271, gnl|rn3|chr1 (95788478-95788113)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-271, gnl|bosTau2|chr18 (48399144-48399393)
               

               
               1-271, gnl|canFam2|chr1 (110018613-110018186)
               

               
               1-271, gnl|echTel1|scaffold_295188 (2755-3138)
               

               
               1-271, gnl|hg17|chr19 (54535221-54535616)
               

               
               1-271, gnl|Hg17|chr19 (54535452-54535675)
               

               
               1-271, gnl|mm7|chr7 (41409772-41409410)
               

               
               1-271, gnl|Mm7|chr7 (41409593-41409341)
               

               
               1-271, gnl|monDom2|scaffold_105 (4346308-4346659)
               

               
               1-271, gnl|oryCun1|scaffold_168603 (4166-3835)
               

               
               1-271, gnl|panTro1|chr20 (51896916-51897309)
               

               
               1-271, gnl|rheMac2|chr19 (55587602-55587973)
               

               
               1-271, gnl|rn3|chr1 (95788478-95788113)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cag (0.453583)
               

               
               ton (0.1755)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.453583)
               

               
               ton (0.1755)

	1-271, gnl\|bosTau2\|chr18 (48399144-48399393)
	1-271, gnl\|canFam2\|chr1 (110018613-110018186)
	1-271, gnl\|echTel1\|scaffold_295188 (2755-3138)
	1-271, gnl\|hg17\|chr19 (54535221-54535616)
	1-271, gnl\|Hg17\|chr19 (54535452-54535675)
	1-271, gnl\|mm7\|chr7 (41409772-41409410)
	1-271, gnl\|Mm7\|chr7 (41409593-41409341)
	1-271, gnl\|monDom2\|scaffold_105 (4346308-4346659)
	1-271, gnl\|oryCun1\|scaffold_168603 (4166-3835)
	1-271, gnl\|panTro1\|chr20 (51896916-51897309)
	1-271, gnl\|rheMac2\|chr19 (55587602-55587973)
	1-271, gnl\|rn3\|chr1 (95788478-95788113)