Non-Coding RNA Search

Ss1.1-rcad34b_d20.5

Sequence:


               
               TAGAAACCATGGAATCTTTTTTTTTTTTTTTAAACCTACTGTCTCACTTTATTACTCGTC
TCTGCCCTTGTGGGGAGACCTCAGGACTCTGAGAGCTGGGCTCCAGGCCCACATTACACC
TCCCTTAGCTTGGGGCCTCTGGAGGGGGCCTGGCAAGGGGCATCCCTGCCCTGGGCCTAA
CCTTGGAGCTGACACTCCTGACACCTGCTCCACCCTTAGGCCCCAGCCCTGACTCAGGAT
GTTTTTGGGAGGTGTGGCCAGGCCCTCTCTGGTTTCCAGCCTAAACAGGAATTGACCCCC
TCTGCCCTCTGGACCCTCACACTCCCCATCTCTTGCCTACCCCAGAATTGCCTCACAGTC
CCTCCAGGAGGGAAGGGAGGCAGAGTCACCATTTAGGAGCCAAACATCATGCCAGGACAG
GCAATAGAGGCTTGCACTGCCTTTGGGGCTGGAGGGAGAAAGAGATGAGGCCACCTGGCT
TCCTCCAGGCTTCCAGAAAAGCCTTCAATGCAATAAAAAGCAACGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGAAACCATGGAATCTTTTTTTTTTTTTTTAAACCTACTGTCTCACTTTATTACTCGTC
TCTGCCCTTGTGGGGAGACCTCAGGACTCTGAGAGCTGGGCTCCAGGCCCACATTACACC
TCCCTTAGCTTGGGGCCTCTGGAGGGGGCCTGGCAAGGGGCATCCCTGCCCTGGGCCTAA
CCTTGGAGCTGACACTCCTGACACCTGCTCCACCCTTAGGCCCCAGCCCTGACTCAGGAT
GTTTTTGGGAGGTGTGGCCAGGCCCTCTCTGGTTTCCAGCCTAAACAGGAATTGACCCCC
TCTGCCCTCTGGACCCTCACACTCCCCATCTCTTGCCTACCCCAGAATTGCCTCACAGTC
CCTCCAGGAGGGAAGGGAGGCAGAGTCACCATTTAGGAGCCAAACATCATGCCAGGACAG
GCAATAGAGGCTTGCACTGCCTTTGGGGCTGGAGGGAGAAAGAGATGAGGCCACCTGGCT
TCCTCCAGGCTTCCAGAAAAGCCTTCAATGCAATAAAAAGCAACGTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-518, - strand, RNAz p=0.999952

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-518, - strand, RNAz p=0.999952

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               182-258, - strand, RNAmicro p=0.94703

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               182-258, - strand, RNAmicro p=0.94703

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-518, gnl|bosTau2|chr7 (15439177-15439707)
               

               
               1-518, gnl|Hg17|chr19 (4125582-4125123)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-518, gnl|bosTau2|chr7 (15439177-15439707)
               

               
               1-518, gnl|Hg17|chr19 (4125582-4125123)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ece (0.229305)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               med (0.116252)

	1-518, gnl\|bosTau2\|chr7 (15439177-15439707)
	1-518, gnl\|Hg17\|chr19 (4125582-4125123)

	ece (0.229305)
	nje (0.16592)
	cag (0.151194)
	lnt (0.142308)
	med (0.116252)