Non-Coding RNA Search

Ss1.1-rcad34b_e13.5

Sequence:


               
               AATTACCTCCGGGTGGCCTTCCAGGAGGTCAACAGTGGCTGCACAGGAAAGACCCTCCTG
GTGAGACCCTACGTCACCACGGAGGACGTGTGTCAGCTCTGTGCTGAGAAGTTCAAGGTG
GCCGACCCCGCGGAATACAGCCTCTTCCTCTTCGTGGACGAAACGTGGCAGCAGCTGGCA
GAGGACACATACCCTCAAAAGATCAAGGCCGAGCTGCACAGCCGGCCACAGCCCCACATC
TTCCACTTCGTCTACAAGCGCATCAAGAAGGATCCTTACGGTGTCATCTTCCAGAATGGG
GAAGAAGACCTCCCCGCCTCCTAGGGGACACGCAAGACTTCCCAGCAGTGCGTCCAAAGG
GGGCTTGGGGACCCGGCCTCTGTGCTGGAGAGGCAGTCCCCTCCTTGGGGACCCCTCGGG
TCAGTGACCGAGCCATCCACAGGCCGACCTGGCCACGGGCACCTTTAGCTGTGTCGCCCA
CGCAAGGTAGCTGAGCTTCCAGAAACAGTAGGATCCGTCCGTCTGAGATGGAGATTTGCA
TCTGATGGTTCAAAGGTCCTGAGATTGTTGGCCACCTACCCCCGGCCAAGTTCTAGGTTG
GCTCCAGTGTATGTGTGTGTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTACCTCCGGGTGGCCTTCCAGGAGGTCAACAGTGGCTGCACAGGAAAGACCCTCCTG
GTGAGACCCTACGTCACCACGGAGGACGTGTGTCAGCTCTGTGCTGAGAAGTTCAAGGTG
GCCGACCCCGCGGAATACAGCCTCTTCCTCTTCGTGGACGAAACGTGGCAGCAGCTGGCA
GAGGACACATACCCTCAAAAGATCAAGGCCGAGCTGCACAGCCGGCCACAGCCCCACATC
TTCCACTTCGTCTACAAGCGCATCAAGAAGGATCCTTACGGTGTCATCTTCCAGAATGGG
GAAGAAGACCTCCCCGCCTCCTAGGGGACACGCAAGACTTCCCAGCAGTGCGTCCAAAGG
GGGCTTGGGGACCCGGCCTCTGTGCTGGAGAGGCAGTCCCCTCCTTGGGGACCCCTCGGG
TCAGTGACCGAGCCATCCACAGGCCGACCTGGCCACGGGCACCTTTAGCTGTGTCGCCCA
CGCAAGGTAGCTGAGCTTCCAGAAACAGTAGGATCCGTCCGTCTGAGATGGAGATTTGCA
TCTGATGGTTCAAAGGTCCTGAGATTGTTGGCCACCTACCCCCGGCCAAGTTCTAGGTTG
GCTCCAGTGTATGTGTGTGTGTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61838573|ref|XP_606701.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61838573|ref|XP_606701.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-199, - strand, RNAz p=0.678238
               

               
               392-500, - strand, RNAz p=0.522015

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.678238
               

               
               392-500, - strand, RNAz p=0.522015

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-620, gnl|bosTau2|chr13 (26868003-26867383)
               

               
               1-620, gnl|Hg17|chr20 (19929257-19929882)
               

               
               1-620, gnl|Mm7|chr2 (145626460-145627101)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-620, gnl|bosTau2|chr13 (26868003-26867383)
               

               
               1-620, gnl|Hg17|chr20 (19929257-19929882)
               

               
               1-620, gnl|Mm7|chr2 (145626460-145627101)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cag (0.151194)
               

               
               eep (0.122564)
               

               
               cbl (0.114797)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               eep (0.122564)
               

               
               cbl (0.114797)

	80-199, - strand, RNAz p=0.678238
	392-500, - strand, RNAz p=0.522015

	1-620, gnl\|bosTau2\|chr13 (26868003-26867383)
	1-620, gnl\|Hg17\|chr20 (19929257-19929882)
	1-620, gnl\|Mm7\|chr2 (145626460-145627101)