Non-Coding RNA Search

Ss1.1-rcad34b_p5.5

Sequence:


               
               AGGAGACCTGGGTCCTTCTTCCTGCTCTGCCCACCTAGCTGCTGCAGATTCGGATCCACC
CACCCCTCCCCTTCAGACCCCACCCTCTCCATTCTGCACAGGGCATGCCCTCCCCAGGGA
ACTCGGCACTCCTGGGCATCACACCGCAGTTAAAGAATTCTGCTTTTTGCAGCCTGGGCT
CCAGTGTGCGGCACCAGCTCAGGCTGGCTACAGGCAGTCCCAGGACCAGAATATTAAGCC
ATGGGATCACGGAATCAGAGAACCATAGAACTGCAGAGTTAGAATTTTGCAGTCAGAGAC
TCACAGTCCTCATCATAGCAGAGATTAAAGCTCAGGGCTTCAAAAAGCATCCTGTCAATC
AGACTCATTGTAGCCAGGAGGCCACATGACCTGCCCAAGGTAAAGCAGTTCATGACAGGG
CCAGTGTTAGATGCCAGATCTCTAGTGTCAGCCCTGATTTCGGAATGTTCTCGGTGATTT
TTAAACTGGGCTCTGCAGGACACTATGGTTCCACGCATGGTGGCCCAGAAGGGATGGCCA
GCTGGGATCGCCAGGCCTCCCTTCAACCAGCGCAGTTCTGTTTTTACCCCTTTTATATCT
GGGCGCTTGGTGTCATTTTCATTTGTGAAACAGGGTTTTCCCGCACTGCCTAAAACGTTG
TAACAAATCTCTGCACTGTGCCATCGTCAATAAATAATCATGACACGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGACCTGGGTCCTTCTTCCTGCTCTGCCCACCTAGCTGCTGCAGATTCGGATCCACC
CACCCCTCCCCTTCAGACCCCACCCTCTCCATTCTGCACAGGGCATGCCCTCCCCAGGGA
ACTCGGCACTCCTGGGCATCACACCGCAGTTAAAGAATTCTGCTTTTTGCAGCCTGGGCT
CCAGTGTGCGGCACCAGCTCAGGCTGGCTACAGGCAGTCCCAGGACCAGAATATTAAGCC
ATGGGATCACGGAATCAGAGAACCATAGAACTGCAGAGTTAGAATTTTGCAGTCAGAGAC
TCACAGTCCTCATCATAGCAGAGATTAAAGCTCAGGGCTTCAAAAAGCATCCTGTCAATC
AGACTCATTGTAGCCAGGAGGCCACATGACCTGCCCAAGGTAAAGCAGTTCATGACAGGG
CCAGTGTTAGATGCCAGATCTCTAGTGTCAGCCCTGATTTCGGAATGTTCTCGGTGATTT
TTAAACTGGGCTCTGCAGGACACTATGGTTCCACGCATGGTGGCCCAGAAGGGATGGCCA
GCTGGGATCGCCAGGCCTCCCTTCAACCAGCGCAGTTCTGTTTTTACCCCTTTTATATCT
GGGCGCTTGGTGTCATTTTCATTTGTGAAACAGGGTTTTCCCGCACTGCCTAAAACGTTG
TAACAAATCTCTGCACTGTGCCATCGTCAATAAATAATCATGACACGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-239, - strand, RNAz p=0.878923

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-239, - strand, RNAz p=0.878923

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               2-315, gnl|bosTau2|chr3 (62179222-62178922)
               

               
               2-315, gnl|canFam2|chr5 (57864735-57864431)
               

               
               2-315, gnl|echTel1|scaffold_314638 (19927-20135)
               

               
               2-315, gnl|hg17|chr1 (54351299-54351558)
               

               
               2-315, gnl|loxAfr1|scaffold_30 (166901-167117)
               

               
               2-315, gnl|mm7|chr4 (106461714-106461411)
               

               
               2-315, gnl|Mm7|chr4 (106461426-106461708)
               

               
               2-315, gnl|oryCun1|scaffold_81696 (5227-4944)
               

               
               2-315, gnl|panTro1|chr1 (52608273-52608532)
               

               
               2-315, gnl|rheMac2|chr1 (57049245-57049504)
               

               
               2-315, gnl|rn3|chr5 (128168104-128167807)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-315, gnl|bosTau2|chr3 (62179222-62178922)
               

               
               2-315, gnl|canFam2|chr5 (57864735-57864431)
               

               
               2-315, gnl|echTel1|scaffold_314638 (19927-20135)
               

               
               2-315, gnl|hg17|chr1 (54351299-54351558)
               

               
               2-315, gnl|loxAfr1|scaffold_30 (166901-167117)
               

               
               2-315, gnl|mm7|chr4 (106461714-106461411)
               

               
               2-315, gnl|Mm7|chr4 (106461426-106461708)
               

               
               2-315, gnl|oryCun1|scaffold_81696 (5227-4944)
               

               
               2-315, gnl|panTro1|chr1 (52608273-52608532)
               

               
               2-315, gnl|rheMac2|chr1 (57049245-57049504)
               

               
               2-315, gnl|rn3|chr5 (128168104-128167807)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cag (0.151194)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               pla (0.133672)

	2-315, gnl\|bosTau2\|chr3 (62179222-62178922)
	2-315, gnl\|canFam2\|chr5 (57864735-57864431)
	2-315, gnl\|echTel1\|scaffold_314638 (19927-20135)
	2-315, gnl\|hg17\|chr1 (54351299-54351558)
	2-315, gnl\|loxAfr1\|scaffold_30 (166901-167117)
	2-315, gnl\|mm7\|chr4 (106461714-106461411)
	2-315, gnl\|Mm7\|chr4 (106461426-106461708)
	2-315, gnl\|oryCun1\|scaffold_81696 (5227-4944)
	2-315, gnl\|panTro1\|chr1 (52608273-52608532)
	2-315, gnl\|rheMac2\|chr1 (57049245-57049504)
	2-315, gnl\|rn3\|chr5 (128168104-128167807)