Ss1.1-rcad35b_b24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCACTCCCTTGGAATGACCTTCCTCAGTGCCCCCTCCCTGTTCCAAGTGCCCAAGGATCC GGATGAAGCCTTCACTGAGGCAGGCCTGGAAAATGATGAGGCGATGCCACCCCTGGTTCA GAAAGTCCTCACATCCCCTTAGGGAGCCATGCCATCATTGTCCCCTTGGGCAACTGGGTC TATGAGCTCTGCTTGATTGAAGGCACTGTCTCTTTTGGTGCAATGCAGAAACCTGGTCCA TGGTGATGAGAGACAGAAGTCTCCCTCGGAGCCAGGAGAACTGTCCTGGTTCTGATGTGA CAAGATCCCTGACTGCCAACCCTGTCCCCCTTAGAGGAGGCAAAGCCTCCTCTAAAGCAG AGATGCCCATGTCCTGGCCCACAGACAGCAGCCTCCTATCTATTGATTGGGACCACAGAT GATTCCTGAAGCCTCTGTAAGAGCTGGCTTTGCAGGTCTTCCTCCACCTTCCACCAAAAG AAGTTCTCACCCCGAACCTTTGGGGGCTCATTTTGGATACCTGGATTCCGGAAAGCCACC GTCACCAGCACGTTTAAGCAGATGCCATCCATTTGGTCTCTGCCCAGGTGCTGCAGTCCA AGCAACCCCTTGGTCTCCACTGCCAAATGGTGCAGGGTCAGGCACTCCTGTAGCAGCCTC AGGACAGCCATCTTGATGCCACCCCTCTGGTCCATGGGAGCAAAGCCACAGGCGGTGATG GGCAAGTGAGGCATCCCCACAGTGCCAACCAGCACCCACACTGTCTGGACACTGGTAAAG GTGGCCACAAGCCGCTGGCAGATCAAACTGCAGGGAAGCTCTTGGGGCAGAATGAGAGGG TGCCTGGCTTGCTGGCGATACTGCACGGCTAGCTCTACCAAGTGCAGAATGTCATGGGCT CGAAGTGGAGTGGGCAGCGAGGTTCGTGGGTACCAGCCAGCCTGCAAGGACTCTGCATCT GCTTCCTTGGAAGTCTTAAGAATTCCACCTGTAGGGCGAGCAAGGAACACGAAGCGGATC CAGGAGGGGCCCCGCTCCTCCAAGGACAGCAGTGTCAGAGGCTCACAGTGCAGCCCAGCC TCCTCCTTCACCTCCCGCTGCAGCGCCTCCACGATGGTCTCCCCAGGCTCCATCCTCCCC GCGGGTAGGTACCACGACCCACGGCACTCTTTCTTGGCTTCCTGGACGAGTAGCACCTCA TCCTGCTCGTTGAGGAACACGGCCAGCACCACGTAGCAGACATTCTTCCGCAGCCGCACG GGCGCCAGCGGCTCCCCGGCCGGTTTCGAATCGCAGCTCTGTACCCGCAGACCCCGGCCC CCCAGAACGGCCGCCAGCGCCCCCGCAAGGCCTTCCGAGGCCATCGGGTCCCCTAAAAGG CGATGGGGAGGGCCCCGAAGACCCGCCGAGAAGGGTAGGGTGGACGTGGGTGACCAAGGG ACTCGTCGCCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCACTCCCTTGGAATGACCTTCCTCAGTGCCCCCTCCCTGTTCCAAGTGCCCAAGGATCC GGATGAAGCCTTCACTGAGGCAGGCCTGGAAAATGATGAGGCGATGCCACCCCTGGTTCA GAAAGTCCTCACATCCCCTTAGGGAGCCATGCCATCATTGTCCCCTTGGGCAACTGGGTC TATGAGCTCTGCTTGATTGAAGGCACTGTCTCTTTTGGTGCAATGCAGAAACCTGGTCCA TGGTGATGAGAGACAGAAGTCTCCCTCGGAGCCAGGAGAACTGTCCTGGTTCTGATGTGA CAAGATCCCTGACTGCCAACCCTGTCCCCCTTAGAGGAGGCAAAGCCTCCTCTAAAGCAG AGATGCCCATGTCCTGGCCCACAGACAGCAGCCTCCTATCTATTGATTGGGACCACAGAT GATTCCTGAAGCCTCTGTAAGAGCTGGCTTTGCAGGTCTTCCTCCACCTTCCACCAAAAG AAGTTCTCACCCCGAACCTTTGGGGGCTCATTTTGGATACCTGGATTCCGGAAAGCCACC GTCACCAGCACGTTTAAGCAGATGCCATCCATTTGGTCTCTGCCCAGGTGCTGCAGTCCA AGCAACCCCTTGGTCTCCACTGCCAAATGGTGCAGGGTCAGGCACTCCTGTAGCAGCCTC AGGACAGCCATCTTGATGCCACCCCTCTGGTCCATGGGAGCAAAGCCACAGGCGGTGATG GGCAAGTGAGGCATCCCCACAGTGCCAACCAGCACCCACACTGTCTGGACACTGGTAAAG GTGGCCACAAGCCGCTGGCAGATCAAACTGCAGGGAAGCTCTTGGGGCAGAATGAGAGGG TGCCTGGCTTGCTGGCGATACTGCACGGCTAGCTCTACCAAGTGCAGAATGTCATGGGCT CGAAGTGGAGTGGGCAGCGAGGTTCGTGGGTACCAGCCAGCCTGCAAGGACTCTGCATCT GCTTCCTTGGAAGTCTTAAGAATTCCACCTGTAGGGCGAGCAAGGAACACGAAGCGGATC CAGGAGGGGCCCCGCTCCTCCAAGGACAGCAGTGTCAGAGGCTCACAGTGCAGCCCAGCC TCCTCCTTCACCTCCCGCTGCAGCGCCTCCACGATGGTCTCCCCAGGCTCCATCCTCCCC GCGGGTAGGTACCACGACCCACGGCACTCTTTCTTGGCTTCCTGGACGAGTAGCACCTCA TCCTGCTCGTTGAGGAACACGGCCAGCACCACGTAGCAGACATTCTTCCGCAGCCGCACG GGCGCCAGCGGCTCCCCGGCCGGTTTCGAATCGCAGCTCTGTACCCGCAGACCCCGGCCC CCCAGAACGGCCGCCAGCGCCCCCGCAAGGCCTTCCGAGGCCATCGGGTCCCCTAAAAGG CGATGGGGAGGGCCCCGAAGACCCGCCGAGAAGGGTAGGGTGGACGTGGGTGACCAAGGG ACTCGTCGCCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 174-659, - strand, RNAz p=0.999999 | |
| 541-645, - strand, RNAz p=0.662747 | |
| 717-808, - strand, RNAz p=0.702902 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 174-659, - strand, RNAz p=0.999999 | |
| 541-645, - strand, RNAz p=0.662747 | |
| 717-808, - strand, RNAz p=0.702902 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AK026147, - |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 96-506, gnl|bosTau2|chr8 (31484198-31483781) | |
| 96-506, gnl|Hg17|chr8 (22020459-22020815) | |
| 541-1005, gnl|bosTau2|chr8 (31483780-31483316) | |
| 541-1005, gnl|canFam2|chr25 (38132103-38131775) | |
| 541-1005, gnl|danRer3|chr8 (39667350-39667009) | |
| 541-1005, gnl|dasNov1|scaffold_253363 (525-197) | |
| 541-1005, gnl|echTel1|scaffold_313141 (172115-171787) | |
| 541-1005, gnl|hg17|chr8 (22020909-22021237) | |
| 541-1005, gnl|Hg17|chr8 (22020904-22021368) | |
| 541-1005, gnl|loxAfr1|scaffold_77305 (11524-11852) | |
| 541-1005, gnl|mm7|chr14 (65224262-65223934) | |
| 541-1005, gnl|Mm7|chr14 (65224265-65223801) | |
| 541-1005, gnl|monDom2|scaffold_1 (73543448-73543120) | |
| 541-1005, gnl|oryCun1|scaffold_189976 (8653-8325) | |
| 541-1005, gnl|panTro1|chr7 (22953477-22953805) | |
| 541-1005, gnl|rheMac2|chr8 (22030520-22030848) | |
| 541-1005, gnl|rn3|chr15 (50994938-50994610) | |
| 541-1005, gnl|xenTro1|scaffold_106 (1362066-1361759) | |
| 1197-1451, gnl|bosTau2|chr8 (31481867-31481614) | |
| 1197-1451, gnl|canFam2|chr25 (38130358-38129967) | |
| 1197-1451, gnl|echTel1|scaffold_313141 (169963-169556) | |
| 1197-1451, gnl|hg17|chr8 (22022526-22022971) | |
| 1197-1451, gnl|Hg17|chr8 (22022590-22022836) | |
| 1197-1451, gnl|loxAfr1|scaffold_31885 (27106-27542) | |
| 1197-1451, gnl|mm7|chr14 (65222671-65222238) | |
| 1197-1451, gnl|Mm7|chr14 (65222599-65222345) | |
| 1197-1451, gnl|monDom2|scaffold_1 (73538836-73538325) | |
| 1197-1451, gnl|panTro1|chr7 (22955094-22955537) | |
| 1197-1451, gnl|rheMac2|chr8 (22032128-22032572) | |
| 1197-1451, gnl|rn3|chr15 (50993219-50992788) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 96-506, gnl|bosTau2|chr8 (31484198-31483781) | |
| 96-506, gnl|Hg17|chr8 (22020459-22020815) | |
| 541-1005, gnl|bosTau2|chr8 (31483780-31483316) | |
| 541-1005, gnl|canFam2|chr25 (38132103-38131775) | |
| 541-1005, gnl|danRer3|chr8 (39667350-39667009) | |
| 541-1005, gnl|dasNov1|scaffold_253363 (525-197) | |
| 541-1005, gnl|echTel1|scaffold_313141 (172115-171787) | |
| 541-1005, gnl|hg17|chr8 (22020909-22021237) | |
| 541-1005, gnl|Hg17|chr8 (22020904-22021368) | |
| 541-1005, gnl|loxAfr1|scaffold_77305 (11524-11852) | |
| 541-1005, gnl|mm7|chr14 (65224262-65223934) | |
| 541-1005, gnl|Mm7|chr14 (65224265-65223801) | |
| 541-1005, gnl|monDom2|scaffold_1 (73543448-73543120) | |
| 541-1005, gnl|oryCun1|scaffold_189976 (8653-8325) | |
| 541-1005, gnl|panTro1|chr7 (22953477-22953805) | |
| 541-1005, gnl|rheMac2|chr8 (22030520-22030848) | |
| 541-1005, gnl|rn3|chr15 (50994938-50994610) | |
| 541-1005, gnl|xenTro1|scaffold_106 (1362066-1361759) | |
| 1197-1451, gnl|bosTau2|chr8 (31481867-31481614) | |
| 1197-1451, gnl|canFam2|chr25 (38130358-38129967) | |
| 1197-1451, gnl|echTel1|scaffold_313141 (169963-169556) | |
| 1197-1451, gnl|hg17|chr8 (22022526-22022971) | |
| 1197-1451, gnl|Hg17|chr8 (22022590-22022836) | |
| 1197-1451, gnl|loxAfr1|scaffold_31885 (27106-27542) | |
| 1197-1451, gnl|mm7|chr14 (65222671-65222238) | |
| 1197-1451, gnl|Mm7|chr14 (65222599-65222345) | |
| 1197-1451, gnl|monDom2|scaffold_1 (73538836-73538325) | |
| 1197-1451, gnl|panTro1|chr7 (22955094-22955537) | |
| 1197-1451, gnl|rheMac2|chr8 (22032128-22032572) | |
| 1197-1451, gnl|rn3|chr15 (50993219-50992788) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cag (0.302389) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| nco (0.161734) | |
| cty (0.10408) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.302389) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| nco (0.161734) | |
| cty (0.10408) |