Ss1.1-rcbe01_l7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCAAAGGGTTTCTTCATAGATACACGGTCCAATAAAACACTGGCTGATTCTCTGGATAA TGCAAATGACCCCAACGATCCCATCGTCAACAAGTTGCTTCGATCAATGGCTACACAGGC CATGTCTAATGCACTGTATTTCTCTACTGGATCGTGTGCCGAGGAAGAGTTCCATCACTA TGGTCTTGCATTAGATAAATATACTCACTTTACTTCTCCAATAAGAAGATATTCAGATAT TATAGTACACCGATTGTTAATGGAAGCCATTTCAAAAGATAAGAAAATGGAAATTAAGGA AAATTTGTTCAGCAACAAAGATCTTGAGGAATTATGTAAACATATCAACAACAGAAACCG AGCAGCACAGCACTGTCAGAAGCAGTCTACTGAGCTCTTCCAATGCATGTATTTTAAAGA CAAAGACCCAGACACTGAGGAGCGTTGCATATCTGATGGGGTTATTTATTCAATTAGGAC AAATGGTGTGCTTGTATTTATACCAAGGTTTGGGATTAAAGGTGCTGCTTATCTAAAAAA TAAAGATGGTCTGGTGATCTCATGCGGCCAAGATAGCCATTGTGAATGGAAACCAGGATC CCTTCAACGATTTCAAAACAAAATCACCTCTACCACAACAGGAGGAGAATCTGTTACATT CCACTTGTTTGACCATATAACAGTGCGAATATCTGTACAGGCCTCCCGTTGCCATGCTGA TACAATAAGGCTTGAAATAATAAGCAACAAACCATACATGATACCAGATACTGAACTTTT TCATCAGAGTGCCCTCTTGCTAAAGAGTGACTTAGTAAAAGAAGTAACTAGATCTGTGGA GGAAGCTCAGCTTGCTCAAGAAGTCAAAGTAAATGTCATTGAAGAAGACTATCAAAAATA TTGCCAAACAAAGGGAAGAAGCCTATACACACTTCTAGAGGAGATAAGAGACCTAGCTCT ACTGGATGTTTCGAACAGTTATGGAATATGAAATACTCTTATTTCATTGAAAGACCTTTG TCGTATGTGAATGTTTCACCTTCTTTTCGACATGCATATCTAATTTCCTGTGTCACCCAG TGTTCTAGTTGGTATGTGTGGAATATTTTTCTCAGTATTAAATTTGCATTAAATAAAGTA CAATTAGGTTACTATGGAAAGTGATTTTTCAGACAATTAGATACTGAGTCATGGCTCTGC AAATCAGGTTGCCTTGTTAATAAACCCAGAATTGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCAAAGGGTTTCTTCATAGATACACGGTCCAATAAAACACTGGCTGATTCTCTGGATAA TGCAAATGACCCCAACGATCCCATCGTCAACAAGTTGCTTCGATCAATGGCTACACAGGC CATGTCTAATGCACTGTATTTCTCTACTGGATCGTGTGCCGAGGAAGAGTTCCATCACTA TGGTCTTGCATTAGATAAATATACTCACTTTACTTCTCCAATAAGAAGATATTCAGATAT TATAGTACACCGATTGTTAATGGAAGCCATTTCAAAAGATAAGAAAATGGAAATTAAGGA AAATTTGTTCAGCAACAAAGATCTTGAGGAATTATGTAAACATATCAACAACAGAAACCG AGCAGCACAGCACTGTCAGAAGCAGTCTACTGAGCTCTTCCAATGCATGTATTTTAAAGA CAAAGACCCAGACACTGAGGAGCGTTGCATATCTGATGGGGTTATTTATTCAATTAGGAC AAATGGTGTGCTTGTATTTATACCAAGGTTTGGGATTAAAGGTGCTGCTTATCTAAAAAA TAAAGATGGTCTGGTGATCTCATGCGGCCAAGATAGCCATTGTGAATGGAAACCAGGATC CCTTCAACGATTTCAAAACAAAATCACCTCTACCACAACAGGAGGAGAATCTGTTACATT CCACTTGTTTGACCATATAACAGTGCGAATATCTGTACAGGCCTCCCGTTGCCATGCTGA TACAATAAGGCTTGAAATAATAAGCAACAAACCATACATGATACCAGATACTGAACTTTT TCATCAGAGTGCCCTCTTGCTAAAGAGTGACTTAGTAAAAGAAGTAACTAGATCTGTGGA GGAAGCTCAGCTTGCTCAAGAAGTCAAAGTAAATGTCATTGAAGAAGACTATCAAAAATA TTGCCAAACAAAGGGAAGAAGCCTATACACACTTCTAGAGGAGATAAGAGACCTAGCTCT ACTGGATGTTTCGAACAGTTATGGAATATGAAATACTCTTATTTCATTGAAAGACCTTTG TCGTATGTGAATGTTTCACCTTCTTTTCGACATGCATATCTAATTTCCTGTGTCACCCAG TGTTCTAGTTGGTATGTGTGGAATATTTTTCTCAGTATTAAATTTGCATTAAATAAAGTA CAATTAGGTTACTATGGAAAGTGATTTTTCAGACAATTAGATACTGAGTCATGGCTCTGC AAATCAGGTTGCCTTGTTAATAAACCCAGAATTGAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 179-362, gnl|bosTau2|chr10 (5341132-5340949) | |
| 179-362, gnl|canFam2|chr30 (33630454-33630581) | |
| 179-362, gnl|danRer3|chr7 (23227686-23227555) | |
| 179-362, gnl|dasNov1|scaffold_9548 (50361-50488) | |
| 179-362, gnl|echTel1|scaffold_237945 (3360-3233) | |
| 179-362, gnl|fr1|chrUn (228164428-228164543) | |
| 179-362, gnl|galGal2|chr10 (19140744-19140873) | |
| 179-362, gnl|hg17|chr15 (64408594-64408721) | |
| 179-362, gnl|Hg17|chr15 (64408609-64408792) | |
| 179-362, gnl|loxAfr1|scaffold_49896 (3755-3628) | |
| 179-362, gnl|mm7|chr9 (64340006-64339880) | |
| 179-362, gnl|Mm7|chr9 (64339990-64339807) | |
| 179-362, gnl|monDom2|scaffold_12 (46564540-46564410) | |
| 179-362, gnl|oryCun1|scaffold_157414 (10167-10045) | |
| 179-362, gnl|panTro1|chr16 (64920731-64920858) | |
| 179-362, gnl|rheMac2|chr7 (44855556-44855683) | |
| 179-362, gnl|rn3|chr8 (68527550-68527423) | |
| 179-362, gnl|tetNig1|chrUn_random (6593566-6593429) | |
| 179-362, gnl|xenTro1|scaffold_862 (264835-264952) | |
| 511-617, gnl|bosTau2|chr24 (8117190-8117296) | |
| 683-1043, gnl|bosTau2|chr10 (5338250-5337891) | |
| 683-1043, gnl|canFam2|chr30 (33633342-33633661) | |
| 683-1043, gnl|danRer3|chr7 (23225284-23224944) | |
| 683-1043, gnl|dasNov1|scaffold_9548 (53421-53738) | |
| 683-1043, gnl|echTel1|scaffold_237945 (998-678) | |
| 683-1043, gnl|fr1|chrUn (228165188-228165489) | |
| 683-1043, gnl|galGal2|chr10 (19142275-19142603) | |
| 683-1043, gnl|hg17|chr15 (64412374-64412693) | |
| 683-1043, gnl|Hg17|chr15 (64412396-64412757) | |
| 683-1043, gnl|loxAfr1|scaffold_49896 (953-634) | |
| 683-1043, gnl|mm7|chr9 (64337009-64336697) | |
| 683-1043, gnl|Mm7|chr9 (64336989-64336638) | |
| 683-1043, gnl|monDom2|scaffold_12 (46558315-46557993) | |
| 683-1043, gnl|oryCun1|scaffold_215194 (109839-109563) | |
| 683-1043, gnl|panTro1|chr16 (64924511-64924830) | |
| 683-1043, gnl|rheMac2|chr7 (44859646-44859965) | |
| 683-1043, gnl|rn3|chr8 (68524438-68524123) | |
| 683-1043, gnl|xenTro1|scaffold_862 (270419-270759) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 179-362, gnl|bosTau2|chr10 (5341132-5340949) | |
| 179-362, gnl|canFam2|chr30 (33630454-33630581) | |
| 179-362, gnl|danRer3|chr7 (23227686-23227555) | |
| 179-362, gnl|dasNov1|scaffold_9548 (50361-50488) | |
| 179-362, gnl|echTel1|scaffold_237945 (3360-3233) | |
| 179-362, gnl|fr1|chrUn (228164428-228164543) | |
| 179-362, gnl|galGal2|chr10 (19140744-19140873) | |
| 179-362, gnl|hg17|chr15 (64408594-64408721) | |
| 179-362, gnl|Hg17|chr15 (64408609-64408792) | |
| 179-362, gnl|loxAfr1|scaffold_49896 (3755-3628) | |
| 179-362, gnl|mm7|chr9 (64340006-64339880) | |
| 179-362, gnl|Mm7|chr9 (64339990-64339807) | |
| 179-362, gnl|monDom2|scaffold_12 (46564540-46564410) | |
| 179-362, gnl|oryCun1|scaffold_157414 (10167-10045) | |
| 179-362, gnl|panTro1|chr16 (64920731-64920858) | |
| 179-362, gnl|rheMac2|chr7 (44855556-44855683) | |
| 179-362, gnl|rn3|chr8 (68527550-68527423) | |
| 179-362, gnl|tetNig1|chrUn_random (6593566-6593429) | |
| 179-362, gnl|xenTro1|scaffold_862 (264835-264952) | |
| 511-617, gnl|bosTau2|chr24 (8117190-8117296) | |
| 683-1043, gnl|bosTau2|chr10 (5338250-5337891) | |
| 683-1043, gnl|canFam2|chr30 (33633342-33633661) | |
| 683-1043, gnl|danRer3|chr7 (23225284-23224944) | |
| 683-1043, gnl|dasNov1|scaffold_9548 (53421-53738) | |
| 683-1043, gnl|echTel1|scaffold_237945 (998-678) | |
| 683-1043, gnl|fr1|chrUn (228165188-228165489) | |
| 683-1043, gnl|galGal2|chr10 (19142275-19142603) | |
| 683-1043, gnl|hg17|chr15 (64412374-64412693) | |
| 683-1043, gnl|Hg17|chr15 (64412396-64412757) | |
| 683-1043, gnl|loxAfr1|scaffold_49896 (953-634) | |
| 683-1043, gnl|mm7|chr9 (64337009-64336697) | |
| 683-1043, gnl|Mm7|chr9 (64336989-64336638) | |
| 683-1043, gnl|monDom2|scaffold_12 (46558315-46557993) | |
| 683-1043, gnl|oryCun1|scaffold_215194 (109839-109563) | |
| 683-1043, gnl|panTro1|chr16 (64924511-64924830) | |
| 683-1043, gnl|rheMac2|chr7 (44859646-44859965) | |
| 683-1043, gnl|rn3|chr8 (68524438-68524123) | |
| 683-1043, gnl|xenTro1|scaffold_862 (270419-270759) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| sag (0.548145) | |
| fco (0.314416) | |
| bfe (0.299715) | |
| fce (0.271592) | |
| ret (0.257467) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| gul (0.177588) | |
| duo (0.172801) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| thg (0.126791) | |
| med (0.116252) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sag (0.548145) | |
| fco (0.314416) | |
| bfe (0.299715) | |
| fce (0.271592) | |
| ret (0.257467) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| gul (0.177588) | |
| duo (0.172801) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| thg (0.126791) | |
| med (0.116252) |