Non-Coding RNA Search

Ss1.1-rcbe03_c10.5

Sequence:


               
               GCTCCTCTCTGCTGCACGCACAGCGTCTGTTCGAGGAGTTTGACTGTTGCTTCCTGCAGG
GCTGGCACTCATAGCCACCAGCTGCTGTTCCAGCACTCAATGCAAGATCTCACTGATTTT
GCCTCATGGAATTATACTTACATAAGATTAGTCTATCTGAAATGAAAAAGGGGTGATGGA
CCAGTTTACTGCTTAGAAACAGCAAGAGGCACTGCAGTAAAATTTTGTTTCTCATTTTTA
AAGCAATGTGGTGTTTGTTGTGTCGGAAAATTTTTATTTATAATACTTGTTAGACTGACA
AAATTAAAAGCAAAATATACAGATACCTAATTGGCATTCATAAGATGAATAATAATGAGT
ACTAAATGACAAAATTCCATTGTCAGTTTTATTACTCGCTTTGCCACCTAAGCAGTAAAA
CATGATATTGACCAGTTGGAGAACTGAGAAAATTATTTCAAATTGCTACATTATAATAAA
TTTGCACACAGATAACATGCATGCTGTATATGAAGTCTTACATCATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCCTCTCTGCTGCACGCACAGCGTCTGTTCGAGGAGTTTGACTGTTGCTTCCTGCAGG
GCTGGCACTCATAGCCACCAGCTGCTGTTCCAGCACTCAATGCAAGATCTCACTGATTTT
GCCTCATGGAATTATACTTACATAAGATTAGTCTATCTGAAATGAAAAAGGGGTGATGGA
CCAGTTTACTGCTTAGAAACAGCAAGAGGCACTGCAGTAAAATTTTGTTTCTCATTTTTA
AAGCAATGTGGTGTTTGTTGTGTCGGAAAATTTTTATTTATAATACTTGTTAGACTGACA
AAATTAAAAGCAAAATATACAGATACCTAATTGGCATTCATAAGATGAATAATAATGAGT
ACTAAATGACAAAATTCCATTGTCAGTTTTATTACTCGCTTTGCCACCTAAGCAGTAAAA
CATGATATTGACCAGTTGGAGAACTGAGAAAATTATTTCAAATTGCTACATTATAATAAA
TTTGCACACAGATAACATGCATGCTGTATATGAAGTCTTACATCATAT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               38-193, - strand, RNAz p=0.644747
               

               
               39-164, - strand, RNAz p=0.858723
               

               
               409-523, - strand, RNAz p=0.765717

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-193, - strand, RNAz p=0.644747
               

               
               39-164, - strand, RNAz p=0.858723
               

               
               409-523, - strand, RNAz p=0.765717

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-523, gnl|bosTau2|chr9 (61803939-61803417)
               

               
               1-523, gnl|canFam2|chr1 (54995027-54995541)
               

               
               1-523, gnl|dasNov1|scaffold_7893 (95314-94759)
               

               
               1-523, gnl|echTel1|scaffold_318912 (5856-5391)
               

               
               1-523, gnl|galGal2|chr3 (40227442-40226895)
               

               
               1-523, gnl|hg17|chr6 (163956560-163957106)
               

               
               1-523, gnl|Hg17|chr6 (163956722-163957256)
               

               
               1-523, gnl|loxAfr1|scaffold_3332 (76081-76580)
               

               
               1-523, gnl|mm7|chr17 (8933739-8933234)
               

               
               1-523, gnl|Mm7|chr17 (8933569-8933045)
               

               
               1-523, gnl|monDom2|scaffold_0 (39272563-39271976)
               

               
               1-523, gnl|oryCun1|scaffold_118081 (8490-9018)
               

               
               1-523, gnl|panTro1|chr5 (168254505-168255052)
               

               
               1-523, gnl|rheMac2|chr4 (160351479-160352025)
               

               
               1-523, gnl|rn3|chr1 (45028494-45029045)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-523, gnl|bosTau2|chr9 (61803939-61803417)
               

               
               1-523, gnl|canFam2|chr1 (54995027-54995541)
               

               
               1-523, gnl|dasNov1|scaffold_7893 (95314-94759)
               

               
               1-523, gnl|echTel1|scaffold_318912 (5856-5391)
               

               
               1-523, gnl|galGal2|chr3 (40227442-40226895)
               

               
               1-523, gnl|hg17|chr6 (163956560-163957106)
               

               
               1-523, gnl|Hg17|chr6 (163956722-163957256)
               

               
               1-523, gnl|loxAfr1|scaffold_3332 (76081-76580)
               

               
               1-523, gnl|mm7|chr17 (8933739-8933234)
               

               
               1-523, gnl|Mm7|chr17 (8933569-8933045)
               

               
               1-523, gnl|monDom2|scaffold_0 (39272563-39271976)
               

               
               1-523, gnl|oryCun1|scaffold_118081 (8490-9018)
               

               
               1-523, gnl|panTro1|chr5 (168254505-168255052)
               

               
               1-523, gnl|rheMac2|chr4 (160351479-160352025)
               

               
               1-523, gnl|rn3|chr1 (45028494-45029045)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cbe (0.239234)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)

	38-193, - strand, RNAz p=0.644747
	39-164, - strand, RNAz p=0.858723
	409-523, - strand, RNAz p=0.765717

	1-523, gnl\|bosTau2\|chr9 (61803939-61803417)
	1-523, gnl\|canFam2\|chr1 (54995027-54995541)
	1-523, gnl\|dasNov1\|scaffold_7893 (95314-94759)
	1-523, gnl\|echTel1\|scaffold_318912 (5856-5391)
	1-523, gnl\|galGal2\|chr3 (40227442-40226895)
	1-523, gnl\|hg17\|chr6 (163956560-163957106)
	1-523, gnl\|Hg17\|chr6 (163956722-163957256)
	1-523, gnl\|loxAfr1\|scaffold_3332 (76081-76580)
	1-523, gnl\|mm7\|chr17 (8933739-8933234)
	1-523, gnl\|Mm7\|chr17 (8933569-8933045)
	1-523, gnl\|monDom2\|scaffold_0 (39272563-39271976)
	1-523, gnl\|oryCun1\|scaffold_118081 (8490-9018)
	1-523, gnl\|panTro1\|chr5 (168254505-168255052)
	1-523, gnl\|rheMac2\|chr4 (160351479-160352025)
	1-523, gnl\|rn3\|chr1 (45028494-45029045)