Ss1.1-rcbe05_o18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGAGGAGGGACGCGCCGGATTGGGGCCGCCGGGGCTAAGCGAGCGACAGACGCGCCACC CGCCGACGCCGCAGCCGCTTGGGGCCCGCACGGACCCTCTGCCTGAGTGTAGAATGAGCC AAGGAGACTCAAACCCAGCAGCCATTCCACATGCAGCAGAAGATATTCAAGGAGATGACA GATGGATGTCACAGCACAACAGATTTGTCCTGGATTGCAAAGACAAAGAGCCGGATGTCC TGTTTGTGGGGGACTCCATGGTGCAGTTGATGCAACAGTATGAGATATGGCGAGAGCTTT TTTCCCCACTTCATGCACTGAATTTTGGAATTGGGGGAGATACAACAAGACATGTTTTAT GGAGACTAAAGAATGGAGAACTGGAGAATATTAAACCTAAGGTCATTGTTGTCTGGGTAG GAACAAACAACCATGAAAATACAGCAGAGGAAGTAGCCGGTGGAATCGAGGCCATTGTAC AACTTATCAACACAAGGCAGCCCCAGGCCAAAATCATTGTATTGGGTTTGTTACCTCGAG GTGAGAAGCCCAACCCTTTGAGGCAAAAGAATGCGAAGGTGAACCAGCTCCTCAAGGTCT CCCTGCCAAAGCTTGCCAATGTTCAACTCCTGGATACAGATGGGGGCTTCGTGCACTCGG ACGGTGCCATCTCCTGCCACGACATGTTTGATTTTCTGCATCTCACAGGAGGGGGCTACG CAAAGATCTGCAAACCCCTCCATGAACTGATTATGCAGTTGTTGGAGGAAACACCTGAGG AAAAACAAACCACCATTGCCTGACTGGCTCCCATCAGTGTTCATAGCGTCCCAGCTTCCT CAGATCAGTTGTATCACTGGCACTACAGAATCCTTCTCTTTCTTAAGGCACTTTGCATTG TAGAATGTTCCTGGATGTTCATATCTAGTGTTTGAAGGGGAGGAGGGATTTAAACTGGTC CTGTACATAGAAGGTTTGTTTGACACAGGAGAAAAATTAGCCAAGGAAGATGGTTGTTTA AATTCATTTGAAACCAGAAGGGGACTTTTTAGTTCTATGTGTGACACATTCATTGGATTA TCACTGTTTTTCCTAGGACAACATCAAGCCTAAGTACTGAACAAAATGAAGATTCTTCTC TTGGCCTTTTCTTTCTATGGATTATGTTATATATAATGATTAGAACCACACCTACTTGGC TTTAAAACAGATGTTTTTCCAGTTTTTAAAGTTCATAATTTAGCCTTTTGTTTTTATTTT GCTTTATTCATATGTTAGAACAACATATAGCATCAGATTGAACGTGCTTGTCATTCAAAT GTGGGAGATGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGAGGAGGGACGCGCCGGATTGGGGCCGCCGGGGCTAAGCGAGCGACAGACGCGCCACC CGCCGACGCCGCAGCCGCTTGGGGCCCGCACGGACCCTCTGCCTGAGTGTAGAATGAGCC AAGGAGACTCAAACCCAGCAGCCATTCCACATGCAGCAGAAGATATTCAAGGAGATGACA GATGGATGTCACAGCACAACAGATTTGTCCTGGATTGCAAAGACAAAGAGCCGGATGTCC TGTTTGTGGGGGACTCCATGGTGCAGTTGATGCAACAGTATGAGATATGGCGAGAGCTTT TTTCCCCACTTCATGCACTGAATTTTGGAATTGGGGGAGATACAACAAGACATGTTTTAT GGAGACTAAAGAATGGAGAACTGGAGAATATTAAACCTAAGGTCATTGTTGTCTGGGTAG GAACAAACAACCATGAAAATACAGCAGAGGAAGTAGCCGGTGGAATCGAGGCCATTGTAC AACTTATCAACACAAGGCAGCCCCAGGCCAAAATCATTGTATTGGGTTTGTTACCTCGAG GTGAGAAGCCCAACCCTTTGAGGCAAAAGAATGCGAAGGTGAACCAGCTCCTCAAGGTCT CCCTGCCAAAGCTTGCCAATGTTCAACTCCTGGATACAGATGGGGGCTTCGTGCACTCGG ACGGTGCCATCTCCTGCCACGACATGTTTGATTTTCTGCATCTCACAGGAGGGGGCTACG CAAAGATCTGCAAACCCCTCCATGAACTGATTATGCAGTTGTTGGAGGAAACACCTGAGG AAAAACAAACCACCATTGCCTGACTGGCTCCCATCAGTGTTCATAGCGTCCCAGCTTCCT CAGATCAGTTGTATCACTGGCACTACAGAATCCTTCTCTTTCTTAAGGCACTTTGCATTG TAGAATGTTCCTGGATGTTCATATCTAGTGTTTGAAGGGGAGGAGGGATTTAAACTGGTC CTGTACATAGAAGGTTTGTTTGACACAGGAGAAAAATTAGCCAAGGAAGATGGTTGTTTA AATTCATTTGAAACCAGAAGGGGACTTTTTAGTTCTATGTGTGACACATTCATTGGATTA TCACTGTTTTTCCTAGGACAACATCAAGCCTAAGTACTGAACAAAATGAAGATTCTTCTC TTGGCCTTTTCTTTCTATGGATTATGTTATATATAATGATTAGAACCACACCTACTTGGC TTTAAAACAGATGTTTTTCCAGTTTTTAAAGTTCATAATTTAGCCTTTTGTTTTTATTTT GCTTTATTCATATGTTAGAACAACATATAGCATCAGATTGAACGTGCTTGTCATTCAAAT GTGGGAGATGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 683-1042, + strand, RNAz p=0.938572 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 683-1042, + strand, RNAz p=0.938572 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_002572, + |
| Aligned organism(s): 66 entry(ies) | More info |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
| 3-109, gnl|bosTau2|chr15 (9144922-9145028) | |
| 3-109, gnl|canFam2|chr5 (19453132-19453222) | |
| 3-109, gnl|dasNov1|scaffold_24142 (11989-12082) | |
| 3-109, gnl|echTel1|scaffold_308434 (94771-94865) | |
| 3-109, gnl|Hg17|chr11 (116520241-116520347) | |
| 3-109, gnl|hg17|chr12 (96629534-96629624) | |
| 3-109, gnl|loxAfr1|scaffold_15626 (37791-37883) | |
| 3-109, gnl|mm7|chr9 (45942841-45942932) | |
| 3-109, gnl|Mm7|chr9 (45942935-45942825) | |
| 3-109, gnl|oryCun1|scaffold_181536 (49965-50057) | |
| 3-109, gnl|panTro1|chr10 (99057912-99058002) | |
| 3-109, gnl|rheMac2|chr11 (98921601-98921691) | |
| 3-109, gnl|rn3|chr8 (88288238-88288160) | |
| 283-403, gnl|bosTau2|chr15 (9164806-9164926) | |
| 283-403, gnl|canFam2|chr5 (19434957-19435075) | |
| 283-403, gnl|canFam2|chr5 (19435101-19434953) | |
| 283-403, gnl|canFam2|chr5 (19435077-19434961) | |
| 283-403, gnl|danRer3|chr16 (5535828-5535721) | |
| 283-403, gnl|danRer3|chr5 (39283988-39283847) | |
| 283-403, gnl|dasNov1|scaffold_24142 (11680-11798) | |
| 283-403, gnl|dasNov1|scaffold_24142 (11800-11684) | |
| 283-403, gnl|dasNov1|scaffold_24142 (11800-11684) | |
| 283-403, gnl|echTel1|scaffold_185153 (2778-2896) | |
| 283-403, gnl|echTel1|scaffold_185153 (2919-2774) | |
| 283-403, gnl|echTel1|scaffold_185153 (2898-2782) | |
| 283-403, gnl|fr1|chrUn (77496081-77496195) | |
| 283-403, gnl|fr1|chrUn (77496225-77496080) | |
| 283-403, gnl|fr1|chrUn (77496196-77496085) | |
| 283-403, gnl|galGal2|chr24 (4891313-4891198) | |
| 283-403, gnl|galGal2|chr24 (4891187-4891320) | |
| 283-403, gnl|galGal2|chr24 (4891196-4891312) | |
| 283-403, gnl|hg17|chr11 (116537046-116537194) | |
| 283-403, gnl|Hg17|chr11 (116537069-116537189) | |
| 283-403, gnl|hg17|chr12 (96629228-96629343) | |
| 283-403, gnl|hg17|chrX (24807489-24807605) | |
| 283-403, gnl|loxAfr1|scaffold_15626 (12298-12416) | |
| 283-403, gnl|loxAfr1|scaffold_15626 (12439-12294) | |
| 283-403, gnl|loxAfr1|scaffold_15626 (12418-12302) | |
| 283-403, gnl|mm7|chr9 (45933206-45933321) | |
| 283-403, gnl|mm7|chr9 (45933346-45933201) | |
| 283-403, gnl|mm7|chr9 (45933321-45933207) | |
| 283-403, gnl|Mm7|chr9 (45933322-45933202) | |
| 283-403, gnl|monDom2|scaffold_2 (122112038-122112156) | |
| 283-403, gnl|monDom2|scaffold_2 (122112185-122112034) | |
| 283-403, gnl|monDom2|scaffold_2 (122112158-122112042) | |
| 283-403, gnl|oryCun1|scaffold_214625 (30406-30291) | |
| 283-403, gnl|oryCun1|scaffold_214625 (30269-30414) | |
| 283-403, gnl|oryCun1|scaffold_214625 (30291-30405) | |
| 283-403, gnl|panTro1|chr10 (99057606-99057721) | |
| 283-403, gnl|panTro1|chr9 (118538090-118538239) | |
| 283-403, gnl|panTro1|chrX (25627758-25627874) | |
| 283-403, gnl|rheMac2|chr11 (98921295-98921410) | |
| 283-403, gnl|rheMac2|chr14 (115558701-115558849) | |
| 283-403, gnl|rheMac2|chrX (22861723-22861840) | |
| 283-403, gnl|rn3|chr8 (88288546-88288429) | |
| 283-403, gnl|rn3|chr8 (48954595-48954450) | |
| 283-403, gnl|rn3|chr8 (48954570-48954456) | |
| 283-403, gnl|tetNig1|chr7 (5440799-5440688) | |
| 283-403, gnl|tetNig1|chr7 (5440670-5440801) | |
| 283-403, gnl|tetNig1|chr7 (5440684-5440795) | |
| 283-403, gnl|xenTro1|scaffold_18 (1333970-1334081) | |
| 283-403, gnl|xenTro1|scaffold_18 (1334104-1333961) | |
| 283-403, gnl|xenTro1|scaffold_18 (1334083-1333968) | |
| 524-1332, gnl|bosTau2|chr15 (9170246-9171058) | |
| 524-1332, gnl|Hg17|chr11 (116543346-116544166) | |
| 524-1332, gnl|Mm7|chr9 (45927090-45926315) |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-109, gnl|bosTau2|chr15 (9144922-9145028) | |
| 3-109, gnl|canFam2|chr5 (19453132-19453222) | |
| 3-109, gnl|dasNov1|scaffold_24142 (11989-12082) | |
| 3-109, gnl|echTel1|scaffold_308434 (94771-94865) | |
| 3-109, gnl|Hg17|chr11 (116520241-116520347) | |
| 3-109, gnl|hg17|chr12 (96629534-96629624) | |
| 3-109, gnl|loxAfr1|scaffold_15626 (37791-37883) | |
| 3-109, gnl|mm7|chr9 (45942841-45942932) | |
| 3-109, gnl|Mm7|chr9 (45942935-45942825) | |
| 3-109, gnl|oryCun1|scaffold_181536 (49965-50057) | |
| 3-109, gnl|panTro1|chr10 (99057912-99058002) | |
| 3-109, gnl|rheMac2|chr11 (98921601-98921691) | |
| 3-109, gnl|rn3|chr8 (88288238-88288160) | |
| 283-403, gnl|bosTau2|chr15 (9164806-9164926) | |
| 283-403, gnl|canFam2|chr5 (19434957-19435075) | |
| 283-403, gnl|canFam2|chr5 (19435101-19434953) | |
| 283-403, gnl|canFam2|chr5 (19435077-19434961) | |
| 283-403, gnl|danRer3|chr16 (5535828-5535721) | |
| 283-403, gnl|danRer3|chr5 (39283988-39283847) | |
| 283-403, gnl|dasNov1|scaffold_24142 (11680-11798) | |
| 283-403, gnl|dasNov1|scaffold_24142 (11800-11684) | |
| 283-403, gnl|dasNov1|scaffold_24142 (11800-11684) | |
| 283-403, gnl|echTel1|scaffold_185153 (2778-2896) | |
| 283-403, gnl|echTel1|scaffold_185153 (2919-2774) | |
| 283-403, gnl|echTel1|scaffold_185153 (2898-2782) | |
| 283-403, gnl|fr1|chrUn (77496081-77496195) | |
| 283-403, gnl|fr1|chrUn (77496225-77496080) | |
| 283-403, gnl|fr1|chrUn (77496196-77496085) | |
| 283-403, gnl|galGal2|chr24 (4891313-4891198) | |
| 283-403, gnl|galGal2|chr24 (4891187-4891320) | |
| 283-403, gnl|galGal2|chr24 (4891196-4891312) | |
| 283-403, gnl|hg17|chr11 (116537046-116537194) | |
| 283-403, gnl|Hg17|chr11 (116537069-116537189) | |
| 283-403, gnl|hg17|chr12 (96629228-96629343) | |
| 283-403, gnl|hg17|chrX (24807489-24807605) | |
| 283-403, gnl|loxAfr1|scaffold_15626 (12298-12416) | |
| 283-403, gnl|loxAfr1|scaffold_15626 (12439-12294) | |
| 283-403, gnl|loxAfr1|scaffold_15626 (12418-12302) | |
| 283-403, gnl|mm7|chr9 (45933206-45933321) | |
| 283-403, gnl|mm7|chr9 (45933346-45933201) | |
| 283-403, gnl|mm7|chr9 (45933321-45933207) | |
| 283-403, gnl|Mm7|chr9 (45933322-45933202) | |
| 283-403, gnl|monDom2|scaffold_2 (122112038-122112156) | |
| 283-403, gnl|monDom2|scaffold_2 (122112185-122112034) | |
| 283-403, gnl|monDom2|scaffold_2 (122112158-122112042) | |
| 283-403, gnl|oryCun1|scaffold_214625 (30406-30291) | |
| 283-403, gnl|oryCun1|scaffold_214625 (30269-30414) | |
| 283-403, gnl|oryCun1|scaffold_214625 (30291-30405) | |
| 283-403, gnl|panTro1|chr10 (99057606-99057721) | |
| 283-403, gnl|panTro1|chr9 (118538090-118538239) | |
| 283-403, gnl|panTro1|chrX (25627758-25627874) | |
| 283-403, gnl|rheMac2|chr11 (98921295-98921410) | |
| 283-403, gnl|rheMac2|chr14 (115558701-115558849) | |
| 283-403, gnl|rheMac2|chrX (22861723-22861840) | |
| 283-403, gnl|rn3|chr8 (88288546-88288429) | |
| 283-403, gnl|rn3|chr8 (48954595-48954450) | |
| 283-403, gnl|rn3|chr8 (48954570-48954456) | |
| 283-403, gnl|tetNig1|chr7 (5440799-5440688) | |
| 283-403, gnl|tetNig1|chr7 (5440670-5440801) | |
| 283-403, gnl|tetNig1|chr7 (5440684-5440795) | |
| 283-403, gnl|xenTro1|scaffold_18 (1333970-1334081) | |
| 283-403, gnl|xenTro1|scaffold_18 (1334104-1333961) | |
| 283-403, gnl|xenTro1|scaffold_18 (1334083-1333968) | |
| 524-1332, gnl|bosTau2|chr15 (9170246-9171058) | |
| 524-1332, gnl|Hg17|chr11 (116543346-116544166) | |
| 524-1332, gnl|Mm7|chr9 (45927090-45926315) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cbe (0.478469) | |
| nco (0.323468) | |
| cki (0.165235) | |
| cst (0.140036) | |
| ese (0.126502) | |
| tra (0.123092) | |
| pgl (0.118483) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.478469) | |
| nco (0.323468) | |
| cki (0.165235) | |
| cst (0.140036) | |
| ese (0.126502) | |
| tra (0.123092) | |
| pgl (0.118483) |