Non-Coding RNA Search

Ss1.1-rcbe08_g24.5

Sequence:


               
               GGACGGTGCAGGCGCAATGAGCGGCGGAAGTAGTTACTGGGAAGTAAGCAAGCGGCAGTT
TCCCTTGGCGTAGCCTCCTCCCGCGCAGAGATGGCGGCTTCACTGCACGTGTGCCCGGGC
TCCGCCCCACACTGCCAGTGCTTTGGCCGCTTGGGCGCCTCCTCCCGCGCAGAGATGGCG
CACGACCCCGCAGAACAGCATCTCAGACATGTTGAAAAAGATGTTTTGATCCCTAAAATT
ATGAGAGAAAAGGCCCGAGAGAGGTGCTCTGAACAAGTTCAAGATTTCACTAAATGCTGC
AAGGACTCTGGAATCCTTATGGTAGTAAAATGCCGGAAAGAAAATTCTGCATTGAAAGAC
TGTCTAACTGCTTACTATAATGATCCAGCCTTTTATGAAGAATGCAAAATGGAATATCTG
AAGGAAAGGGAAGAATTCAGAAAAACTGGGATTCCTACCAAGAAAAGACTACAGAAGCTT
CCCACAAGCATGTAGGCGAAGTCAAATGATACTCAGGAACCCTAATATCCATGGAAATCA
CAGTCACCTGAAATAACGGACTTAAGGAAGTGTTTGCTTTACCCTTAATTACGGAAATAA
TTTTATCTGAAATAAAGTTCTTGCAAACTTCAAAAAAAAAAAAAAAAAATAGGATAGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACGGTGCAGGCGCAATGAGCGGCGGAAGTAGTTACTGGGAAGTAAGCAAGCGGCAGTT
TCCCTTGGCGTAGCCTCCTCCCGCGCAGAGATGGCGGCTTCACTGCACGTGTGCCCGGGC
TCCGCCCCACACTGCCAGTGCTTTGGCCGCTTGGGCGCCTCCTCCCGCGCAGAGATGGCG
CACGACCCCGCAGAACAGCATCTCAGACATGTTGAAAAAGATGTTTTGATCCCTAAAATT
ATGAGAGAAAAGGCCCGAGAGAGGTGCTCTGAACAAGTTCAAGATTTCACTAAATGCTGC
AAGGACTCTGGAATCCTTATGGTAGTAAAATGCCGGAAAGAAAATTCTGCATTGAAAGAC
TGTCTAACTGCTTACTATAATGATCCAGCCTTTTATGAAGAATGCAAAATGGAATATCTG
AAGGAAAGGGAAGAATTCAGAAAAACTGGGATTCCTACCAAGAAAAGACTACAGAAGCTT
CCCACAAGCATGTAGGCGAAGTCAAATGATACTCAGGAACCCTAATATCCATGGAAATCA
CAGTCACCTGAAATAACGGACTTAAGGAAGTGTTTGCTTTACCCTTAATTACGGAAATAA
TTTTATCTGAAATAAAGTTCTTGCAAACTTCAAAAAAAAAAAAAAAAAATAGGATAGGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57103840|ref|XP_542752.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57103840|ref|XP_542752.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               186-601, gnl|bosTau2|chr17 (8658466-8658884)
               

               
               186-601, gnl|Hg17|chr17 (44469500-44469923)
               

               
               186-601, gnl|Mm7|chr1 (127907061-127907943)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               186-601, gnl|bosTau2|chr17 (8658466-8658884)
               

               
               186-601, gnl|Hg17|chr17 (44469500-44469923)
               

               
               186-601, gnl|Mm7|chr1 (127907061-127907943)

Expressed library(ies): 27 entry(ies)

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Expressed library(ies): 27 entry(ies)

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               cbe (0.717703)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               spc (0.340097)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               cst (0.280073)
               

               
               kid (0.259471)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               spc (0.340097)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               cst (0.280073)
               

               
               kid (0.259471)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

	186-601, gnl\|bosTau2\|chr17 (8658466-8658884)
	186-601, gnl\|Hg17\|chr17 (44469500-44469923)
	186-601, gnl\|Mm7\|chr1 (127907061-127907943)

	cbe (0.717703)
	sag (0.36543)
	mgm (0.360685)
	spc (0.340097)
	cut (0.339847)
	vin (0.332557)
	fco (0.314416)
	sme (0.305437)
	bfe (0.299715)
	cte (0.29274)
	cst (0.280073)
	kid (0.259471)
	aor (0.195274)
	ldo (0.194005)
	sto (0.179824)
	ton (0.1755)
	eye (0.170503)
	nco (0.161734)
	fat (0.147427)
	spl (0.143184)
	csk (0.140746)
	nca (0.136874)
	che (0.136314)
	ste (0.135208)
	nmm (0.132802)
	ute (0.132784)
	ese (0.126502)