Non-Coding RNA Search

Ss1.1-rcbe09_i23.5

Sequence:


               
               ACACTCCAAGCTGCCATAAGGGGGAGAGGGGTGGAATTTTATTCTGCACCCTTTTCCTTC
CCTAGATAATTATGTCTAAGTAGTTTTAATTTTATAATTAACTTTGAGCCAAAATATAAC
TGGCTAGATAGTCTCATTATTTTATTTATCTTGCCCCATTGCAACTTTATGGCTCAGTAA
ATATATAATTTTTTATAAATGTGCATCTTTAAATTTAAACATTTGTAAAGTTATAGCAAA
GGTTACAGATCTGTTAATACACAGGATGTGTATGGATTATTTATGTTACGAAAATAAAAC
ACTTAAATGGTTTTTTGAAGCATCTCGAATTCCAGCTGAAATAATTTTAGCATTAACTTT
TTCTTCCCGAACCAATATCTCATTTCTTGGCTGTGCAGGCGATGCCATGACACATCTGAT
AATCAGAAAAATCACTGTGCTGAACTTTGATTCATGTTTAGCTTCCAAATATTTTTCTAA
TGTTCTGCTTTTTAAATGGTATCACTGTTAAATGCCATTTCTGTTTTGAGATTGTGGCCC
CTTATTATTGGCTGCTGGATCCTGGTGTATCTGTGTTCTTCCGGCTGCTGGATCCTGGTG
TATCTGTGTTCTTCCTTAAGTACCAAAAAGGGAGGAATTGGGGGTGGGGCAAAAGAAGAC
TTTCTGATATAAAGTCTGTGGCTTAAATTATGTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACTCCAAGCTGCCATAAGGGGGAGAGGGGTGGAATTTTATTCTGCACCCTTTTCCTTC
CCTAGATAATTATGTCTAAGTAGTTTTAATTTTATAATTAACTTTGAGCCAAAATATAAC
TGGCTAGATAGTCTCATTATTTTATTTATCTTGCCCCATTGCAACTTTATGGCTCAGTAA
ATATATAATTTTTTATAAATGTGCATCTTTAAATTTAAACATTTGTAAAGTTATAGCAAA
GGTTACAGATCTGTTAATACACAGGATGTGTATGGATTATTTATGTTACGAAAATAAAAC
ACTTAAATGGTTTTTTGAAGCATCTCGAATTCCAGCTGAAATAATTTTAGCATTAACTTT
TTCTTCCCGAACCAATATCTCATTTCTTGGCTGTGCAGGCGATGCCATGACACATCTGAT
AATCAGAAAAATCACTGTGCTGAACTTTGATTCATGTTTAGCTTCCAAATATTTTTCTAA
TGTTCTGCTTTTTAAATGGTATCACTGTTAAATGCCATTTCTGTTTTGAGATTGTGGCCC
CTTATTATTGGCTGCTGGATCCTGGTGTATCTGTGTTCTTCCGGCTGCTGGATCCTGGTG
TATCTGTGTTCTTCCTTAAGTACCAAAAAGGGAGGAATTGGGGGTGGGGCAAAAGAAGAC
TTTCTGATATAAAGTCTGTGGCTTAAATTATGTGTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               146-580, gnl|bosTau2|chr14 (43734696-43735124)
               

               
               146-580, gnl|Hg17|chr14 (35078151-35077726)
               

               
               146-580, gnl|Mm7|chr12 (53530049-53529542)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               146-580, gnl|bosTau2|chr14 (43734696-43735124)
               

               
               146-580, gnl|Hg17|chr14 (35078151-35077726)
               

               
               146-580, gnl|Mm7|chr12 (53530049-53529542)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               aor (0.390549)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.390549)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)

	146-580, gnl\|bosTau2\|chr14 (43734696-43735124)
	146-580, gnl\|Hg17\|chr14 (35078151-35077726)
	146-580, gnl\|Mm7\|chr12 (53530049-53529542)

	aor (0.390549)
	cbe (0.239234)
	fcc (0.197785)
	sto (0.179824)
	eye (0.170503)
	mga (0.160205)
	fat (0.147427)
	lyg (0.133103)