Non-Coding RNA Search

Ss1.1-rcbe10_o5.5

Sequence:


               
               CATTGAGTCCAACTCCTTGAAAATGTTTAAAGATGAACCAAACTCATCTTCCCCTGTCAG
GACAGCTGCTTCCATGATGAGGTTCTGGAAGGCAGCCAGCCCCATGGTGCTGAGGCCAGG
CAAGATGTGTGGGGAATGGATGACAGAAGGCCACCTAATCAGGTGCTGTCTGATGAACTG
AAGTGAAACACTGTAAACAGAATGGGTCAAAGGAAGGAGAGGCACACAATTTCAGCCAAG
GCCGCAAAGCCAGAATGATCTGGAAAATATAACTACAGAAAACACAATCATTTGGAGTCT
AACATCTAAACAAACCACCATACAGTTCTTAATTGGGGAGTGGGGAGTGGGGGTGGGTCA
AAGCTATATTTAACAACAAACTCAATTCAAAACCAACTACATATTTATTCTTTCCATAAA
GTATTGCTGGCAACGTCTTATTTGCTGTGTCCAAAATTAGGAATAGCATAAATAAATGTA
ACTTTAAAAATGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTGAGTCCAACTCCTTGAAAATGTTTAAAGATGAACCAAACTCATCTTCCCCTGTCAG
GACAGCTGCTTCCATGATGAGGTTCTGGAAGGCAGCCAGCCCCATGGTGCTGAGGCCAGG
CAAGATGTGTGGGGAATGGATGACAGAAGGCCACCTAATCAGGTGCTGTCTGATGAACTG
AAGTGAAACACTGTAAACAGAATGGGTCAAAGGAAGGAGAGGCACACAATTTCAGCCAAG
GCCGCAAAGCCAGAATGATCTGGAAAATATAACTACAGAAAACACAATCATTTGGAGTCT
AACATCTAAACAAACCACCATACAGTTCTTAATTGGGGAGTGGGGAGTGGGGGTGGGTCA
AAGCTATATTTAACAACAAACTCAATTCAAAACCAACTACATATTTATTCTTTCCATAAA
GTATTGCTGGCAACGTCTTATTTGCTGTGTCCAAAATTAGGAATAGCATAAATAAATGTA
ACTTTAAAAATGAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-160, - strand, RNAz p=0.840581

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-160, - strand, RNAz p=0.840581

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-494, gnl|bosTau2|chr2 (28419224-28418726)
               

               
               1-494, gnl|Hg17|chr2 (155376290-155375792)
               

               
               1-494, gnl|Mm7|chr2 (55433081-55432582)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-494, gnl|bosTau2|chr2 (28419224-28418726)
               

               
               1-494, gnl|Hg17|chr2 (155376290-155375792)
               

               
               1-494, gnl|Mm7|chr2 (55433081-55432582)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cbe (0.239234)
               

               
               eye (0.170503)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               eye (0.170503)

	1-494, gnl\|bosTau2\|chr2 (28419224-28418726)
	1-494, gnl\|Hg17\|chr2 (155376290-155375792)
	1-494, gnl\|Mm7\|chr2 (55433081-55432582)