Ss1.1-rcbe11_j15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCAAGAGACGGGGAGGGCTTCCGGGGCTGCGGGTCTGACGGCGGAGAGCTGCTGTCAT GGCGGCCGCTCTATGGGGCCTCTTCCCCGTCTTTTTGCTTCTGCTGTCAGGGGATGCCCA GAGCTCGGAGGTGTCTGGGTCTACCTCCGAGGGGTCAGGAGGGAGTGGGGCCGGCATAGG AGATCGCTTCAAGATTGAAGGCCGTGCGGTTGTTCCTGGAGTGAAGCCCCAGGACTGGAT CTCCGCGGCCCGAGTGCTGGTAGACGGAGAAGAGCATGTCGGCTTCCTTAAGACAGATGG CAGTTTTGTAGTTCATGATATACCTTCTGGATCTTATGTAGTGGAAGTTATATCTCCAGC TTATAGGTTTGATCCCGTCCGAGTGGATATCACTTCAAAAGGAAAAATGAGAGCGAGGTA TGTGAATTACATCAAAACGTCAGAAGTGGTCAGACTGCCCTATCCTCTCCAGATGAAATC TTCAGGCCCTCCTTCTTACTTCATTAAAAGGGAATCTTGGGGCTGGACAGACTTTCTGAT GAACCCAATGGTTATGATGATGGTCCTTCCATTACTGATATTTGTGCTTCTGCCCAAAGT GGTCAACACAAGTGATCCTGAGATGAGACGGGAGATGGAGCAGTCAATGAATATGCTGAA TTCCAACCATGAATTACCTGATGTTTCTGAGTTCATGACAAGACTCTTCTCTTCAAAATC ATCTGGCAAATCTAGCAGTGGCAGCAGTAAAACAGGCAAAAGTGGGGCTGGCAAAAGGAG GTAGTCAGGCAGGTCAGAAATGGCATTTGCACAAATATGGCAACACTGGGTGCCATCCAA GTTTTGAGGAAAAACCATGTGAAGCAACTACTGTAAACTTGAGTCATCCTTAAAGTTGAT CTCTGATAACTGTTGTGTGTGATAACTCTTCAGCACATGTTTGCGTTTGGTACACAAGAA AATCCAGCTTTCATTCTTTGTCTATACGAGGTCAATACTGATGTCACTGAATTAATTACA GTGTCCTATAGAAAATGACATTAATAAGTTATATGAAGTACTATACATTAAGTATATTAA AATAAGTCTTAATCCAGAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCAAGAGACGGGGAGGGCTTCCGGGGCTGCGGGTCTGACGGCGGAGAGCTGCTGTCAT GGCGGCCGCTCTATGGGGCCTCTTCCCCGTCTTTTTGCTTCTGCTGTCAGGGGATGCCCA GAGCTCGGAGGTGTCTGGGTCTACCTCCGAGGGGTCAGGAGGGAGTGGGGCCGGCATAGG AGATCGCTTCAAGATTGAAGGCCGTGCGGTTGTTCCTGGAGTGAAGCCCCAGGACTGGAT CTCCGCGGCCCGAGTGCTGGTAGACGGAGAAGAGCATGTCGGCTTCCTTAAGACAGATGG CAGTTTTGTAGTTCATGATATACCTTCTGGATCTTATGTAGTGGAAGTTATATCTCCAGC TTATAGGTTTGATCCCGTCCGAGTGGATATCACTTCAAAAGGAAAAATGAGAGCGAGGTA TGTGAATTACATCAAAACGTCAGAAGTGGTCAGACTGCCCTATCCTCTCCAGATGAAATC TTCAGGCCCTCCTTCTTACTTCATTAAAAGGGAATCTTGGGGCTGGACAGACTTTCTGAT GAACCCAATGGTTATGATGATGGTCCTTCCATTACTGATATTTGTGCTTCTGCCCAAAGT GGTCAACACAAGTGATCCTGAGATGAGACGGGAGATGGAGCAGTCAATGAATATGCTGAA TTCCAACCATGAATTACCTGATGTTTCTGAGTTCATGACAAGACTCTTCTCTTCAAAATC ATCTGGCAAATCTAGCAGTGGCAGCAGTAAAACAGGCAAAAGTGGGGCTGGCAAAAGGAG GTAGTCAGGCAGGTCAGAAATGGCATTTGCACAAATATGGCAACACTGGGTGCCATCCAA GTTTTGAGGAAAAACCATGTGAAGCAACTACTGTAAACTTGAGTCATCCTTAAAGTTGAT CTCTGATAACTGTTGTGTGTGATAACTCTTCAGCACATGTTTGCGTTTGGTACACAAGAA AATCCAGCTTTCATTCTTTGTCTATACGAGGTCAATACTGATGTCACTGAATTAATTACA GTGTCCTATAGAAAATGACATTAATAAGTTATATGAAGTACTATACATTAAGTATATTAA AATAAGTCTTAATCCAGAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 3-108, + strand, RNAz p=0.973281 | |
| 435-552, + strand, RNAz p=0.773564 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 3-108, + strand, RNAz p=0.973281 | |
| 435-552, + strand, RNAz p=0.773564 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 3-292, gnl|bosTau2|chr10 (17461379-17461668) | |
| 3-292, gnl|Hg17|chr15 (32181387-32181096) | |
| 3-292, gnl|Mm7|chr2 (112305240-112305539) | |
| 407-552, gnl|bosTau2|chr10 (17472514-17472659) | |
| 407-552, gnl|canFam2|chr30 (3951834-3951656) | |
| 407-552, gnl|danRer3|chr20 (37160190-37160365) | |
| 407-552, gnl|echTel1|scaffold_276233 (48682-48511) | |
| 407-552, gnl|fr1|chrUn (107862560-107862390) | |
| 407-552, gnl|galGal2|chr5 (26938228-26938057) | |
| 407-552, gnl|hg17|chr15 (32169800-32169978) | |
| 407-552, gnl|Hg17|chr15 (32169953-32169808) | |
| 407-552, gnl|loxAfr1|scaffold_347 (154591-154413) | |
| 407-552, gnl|mm7|chr2 (112313188-112313016) | |
| 407-552, gnl|Mm7|chr2 (112313034-112313179) | |
| 407-552, gnl|monDom2|scaffold_12 (11927779-11927958) | |
| 407-552, gnl|oryCun1|scaffold_206663 (36942-36764) | |
| 407-552, gnl|panTro1|chr16 (31806012-31806190) | |
| 407-552, gnl|rheMac2|chr7 (12333924-12334102) | |
| 407-552, gnl|rn3|chr3 (98209870-98209698) | |
| 407-552, gnl|tetNig1|chr14 (2150403-2150254) | |
| 407-552, gnl|xenTro1|scaffold_7 (107714-107549) | |
| 628-1104, gnl|bosTau2|chr10 (17476401-17476877) | |
| 628-1104, gnl|Hg17|chr15 (32163983-32163511) | |
| 628-1104, gnl|Mm7|chr2 (112317215-112317681) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-292, gnl|bosTau2|chr10 (17461379-17461668) | |
| 3-292, gnl|Hg17|chr15 (32181387-32181096) | |
| 3-292, gnl|Mm7|chr2 (112305240-112305539) | |
| 407-552, gnl|bosTau2|chr10 (17472514-17472659) | |
| 407-552, gnl|canFam2|chr30 (3951834-3951656) | |
| 407-552, gnl|danRer3|chr20 (37160190-37160365) | |
| 407-552, gnl|echTel1|scaffold_276233 (48682-48511) | |
| 407-552, gnl|fr1|chrUn (107862560-107862390) | |
| 407-552, gnl|galGal2|chr5 (26938228-26938057) | |
| 407-552, gnl|hg17|chr15 (32169800-32169978) | |
| 407-552, gnl|Hg17|chr15 (32169953-32169808) | |
| 407-552, gnl|loxAfr1|scaffold_347 (154591-154413) | |
| 407-552, gnl|mm7|chr2 (112313188-112313016) | |
| 407-552, gnl|Mm7|chr2 (112313034-112313179) | |
| 407-552, gnl|monDom2|scaffold_12 (11927779-11927958) | |
| 407-552, gnl|oryCun1|scaffold_206663 (36942-36764) | |
| 407-552, gnl|panTro1|chr16 (31806012-31806190) | |
| 407-552, gnl|rheMac2|chr7 (12333924-12334102) | |
| 407-552, gnl|rn3|chr3 (98209870-98209698) | |
| 407-552, gnl|tetNig1|chr14 (2150403-2150254) | |
| 407-552, gnl|xenTro1|scaffold_7 (107714-107549) | |
| 628-1104, gnl|bosTau2|chr10 (17476401-17476877) | |
| 628-1104, gnl|Hg17|chr15 (32163983-32163511) | |
| 628-1104, gnl|Mm7|chr2 (112317215-112317681) |
| Expressed library(ies): 35 entry(ies) | More info |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
| tes (1.03907) | |
| ova (0.516529) | |
| pro (0.512033) | |
| sug (0.509165) | |
| ski (0.440205) | |
| aor (0.390549) | |
| kid (0.389206) | |
| ill (0.351185) | |
| duo (0.345602) | |
| eep (0.245128) | |
| cbe (0.239234) | |
| cbl (0.229595) | |
| ece (0.229305) | |
| spc (0.226732) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| sto (0.179824) | |
| gul (0.177588) | |
| sin (0.174948) | |
| cki (0.165235) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| ret (0.128733) | |
| thg (0.126791) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (1.03907) | |
| ova (0.516529) | |
| pro (0.512033) | |
| sug (0.509165) | |
| ski (0.440205) | |
| aor (0.390549) | |
| kid (0.389206) | |
| ill (0.351185) | |
| duo (0.345602) | |
| eep (0.245128) | |
| cbe (0.239234) | |
| cbl (0.229595) | |
| ece (0.229305) | |
| spc (0.226732) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| sto (0.179824) | |
| gul (0.177588) | |
| sin (0.174948) | |
| cki (0.165235) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| ret (0.128733) | |
| thg (0.126791) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |