Non-Coding RNA Search

Ss1.1-rcbe12_d23.5

Sequence:


               
               ATTATCTATAGATTACTCGTCCAGGTGGAGTTGAAGGAGTTAAGAGGGTCAATTAAAATC
ACTCACAGTGCTGCTTGCTATCAAGCAGTGAAAACTGTTGTCTGCTGGACTTGAGAAATA
ACTGTAACTGATGCTCTGGTGAAGCTATACTCTTCCCTCCCCAACTATCTATATAGAGTT
GCTTAACAAAGGATAGTGTGGCATTTTAGGAGGCTGAGGGAAGGGAAGTTATGATGCAGA
GGGACAGCCCACTGGGGAGTCAAAACATTTTAAAGTTTGGATTATATCAAGTGGCGTGTG
CTGTGACCATTTATAATGTTAGTAGAAATTTTAACAATAGATGCTTATTCTCAAAGCAGA
AACAGTGGCAGATTTTTACAAAAGATGTATCGTTCCAATTTGGAATCCTTACTTTAACAA
TTCCTAGATAAAAGAGATGGTCTTTGCTTATGAATATTTATAACAGCATTCTTGTCACAA
TAAACGTATTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTATCTATAGATTACTCGTCCAGGTGGAGTTGAAGGAGTTAAGAGGGTCAATTAAAATC
ACTCACAGTGCTGCTTGCTATCAAGCAGTGAAAACTGTTGTCTGCTGGACTTGAGAAATA
ACTGTAACTGATGCTCTGGTGAAGCTATACTCTTCCCTCCCCAACTATCTATATAGAGTT
GCTTAACAAAGGATAGTGTGGCATTTTAGGAGGCTGAGGGAAGGGAAGTTATGATGCAGA
GGGACAGCCCACTGGGGAGTCAAAACATTTTAAAGTTTGGATTATATCAAGTGGCGTGTG
CTGTGACCATTTATAATGTTAGTAGAAATTTTAACAATAGATGCTTATTCTCAAAGCAGA
AACAGTGGCAGATTTTTACAAAAGATGTATCGTTCCAATTTGGAATCCTTACTTTAACAA
TTCCTAGATAAAAGAGATGGTCTTTGCTTATGAATATTTATAACAGCATTCTTGTCACAA
TAAACGTATTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               148-265, - strand, RNAz p=0.962441

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               148-265, - strand, RNAz p=0.962441

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-492, gnl|bosTau2|chr3 (65485141-65485630)
               

               
               1-492, gnl|canFam2|chr5 (53972642-53972253)
               

               
               1-492, gnl|dasNov1|scaffold_66399 (11741-12113)
               

               
               1-492, gnl|hg17|chr1 (58958465-58958855)
               

               
               1-492, gnl|Hg17|chr1 (58958991-58958492)
               

               
               1-492, gnl|loxAfr1|scaffold_13190 (29955-29566)
               

               
               1-492, gnl|mm7|chr4 (94441633-94442021)
               

               
               1-492, gnl|Mm7|chr4 (94442119-94441664)
               

               
               1-492, gnl|monDom2|scaffold_40 (16677102-16676747)
               

               
               1-492, gnl|oryCun1|scaffold_211290 (51929-52308)
               

               
               1-492, gnl|panTro1|chr1 (57295373-57295764)
               

               
               1-492, gnl|rheMac2|chr1 (61628327-61628725)
               

               
               1-492, gnl|rn3|chr5 (115363379-115363767)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-492, gnl|bosTau2|chr3 (65485141-65485630)
               

               
               1-492, gnl|canFam2|chr5 (53972642-53972253)
               

               
               1-492, gnl|dasNov1|scaffold_66399 (11741-12113)
               

               
               1-492, gnl|hg17|chr1 (58958465-58958855)
               

               
               1-492, gnl|Hg17|chr1 (58958991-58958492)
               

               
               1-492, gnl|loxAfr1|scaffold_13190 (29955-29566)
               

               
               1-492, gnl|mm7|chr4 (94441633-94442021)
               

               
               1-492, gnl|Mm7|chr4 (94442119-94441664)
               

               
               1-492, gnl|monDom2|scaffold_40 (16677102-16676747)
               

               
               1-492, gnl|oryCun1|scaffold_211290 (51929-52308)
               

               
               1-492, gnl|panTro1|chr1 (57295373-57295764)
               

               
               1-492, gnl|rheMac2|chr1 (61628327-61628725)
               

               
               1-492, gnl|rn3|chr5 (115363379-115363767)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               sme (0.305437)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               csk (0.140746)
               

               
               pgl (0.118483)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               csk (0.140746)
               

               
               pgl (0.118483)

	1-492, gnl\|bosTau2\|chr3 (65485141-65485630)
	1-492, gnl\|canFam2\|chr5 (53972642-53972253)
	1-492, gnl\|dasNov1\|scaffold_66399 (11741-12113)
	1-492, gnl\|hg17\|chr1 (58958465-58958855)
	1-492, gnl\|Hg17\|chr1 (58958991-58958492)
	1-492, gnl\|loxAfr1\|scaffold_13190 (29955-29566)
	1-492, gnl\|mm7\|chr4 (94441633-94442021)
	1-492, gnl\|Mm7\|chr4 (94442119-94441664)
	1-492, gnl\|monDom2\|scaffold_40 (16677102-16676747)
	1-492, gnl\|oryCun1\|scaffold_211290 (51929-52308)
	1-492, gnl\|panTro1\|chr1 (57295373-57295764)
	1-492, gnl\|rheMac2\|chr1 (61628327-61628725)
	1-492, gnl\|rn3\|chr5 (115363379-115363767)

	sme (0.305437)
	cbe (0.239234)
	aor (0.195274)
	cmu (0.186393)
	sto (0.179824)
	csk (0.140746)
	pgl (0.118483)