Non-Coding RNA Search

Ss1.1-rcbe12_p2.5

Sequence:


               
               TGGCATTATCCCCCCTCCCCCATGGGCTGGGTTGATACTGTGAAATAACTAAAAAGTAAA
ATAACATTTTCATGCCCCCCCCACACCATCATGGAAAAAGAAAGCAGCCTTTCCGTGAGC
CCCTGGCCCCAGCGGAACTAGTGTGTCACCTGTAAAGACAAAGATGAGAGAGCTTCCTGC
CCAGGGAACTGCTGGTCTCAGGTACCCTTCTCCAGAGCCGTGCTTCCAGCTAAGTCCCCC
CAGAAAATCTTACCTGGACCGCGTACAGGTGCCCCAGGGTATTTCGCGCGGTTGCCATGG
AAGAAATTTTCCAGATGGGCTCCTCCGATCCTAATTCTTAGGGACCAAAGGTGTTTTTAA
CAAGATGATCTTTATATTTGATTTTTTTATCGAGAAAGGAAATGGTGGCTCTACCTTGTA
GCGTCAACTTTTAAATTATAGCTGTTCAGCATGAATTGACCACGACTGTAAGTTGTAAAT
GGTTTTCATATTAAGAATGTAATTATTTCCTTATTGTATTTTTTAGAAACAAAAGTCATA
TTTAAAATTCTCTTTGAAAGAAACAGGCAAGAAACAGGAAAGATTTTTTTAAGGAAATAT
GTTGGCAGGGCCCGTTTTAAAAGAACTGTAAATATATTTTCACTGTGTTCCTCGATGTAT
TTAATCCATAAAGTGAGAAAATTTTATCCGAAGAAACTCGCATTGGCAATACGAGTTTTC
AGTCCATTTGCCCGATTTTGTAGTAGCCACACTTGAATTTTCTGCTCTCTTAATGGATTT
TCTTTTCTGCAGTTTCACACGGTATAGCCCGCAGACTGGCGCCCCTGGCGTGCCTCCTGT
GTGTAATGTCATAACTAATAAACTCGACTCTTCCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCATTATCCCCCCTCCCCCATGGGCTGGGTTGATACTGTGAAATAACTAAAAAGTAAA
ATAACATTTTCATGCCCCCCCCACACCATCATGGAAAAAGAAAGCAGCCTTTCCGTGAGC
CCCTGGCCCCAGCGGAACTAGTGTGTCACCTGTAAAGACAAAGATGAGAGAGCTTCCTGC
CCAGGGAACTGCTGGTCTCAGGTACCCTTCTCCAGAGCCGTGCTTCCAGCTAAGTCCCCC
CAGAAAATCTTACCTGGACCGCGTACAGGTGCCCCAGGGTATTTCGCGCGGTTGCCATGG
AAGAAATTTTCCAGATGGGCTCCTCCGATCCTAATTCTTAGGGACCAAAGGTGTTTTTAA
CAAGATGATCTTTATATTTGATTTTTTTATCGAGAAAGGAAATGGTGGCTCTACCTTGTA
GCGTCAACTTTTAAATTATAGCTGTTCAGCATGAATTGACCACGACTGTAAGTTGTAAAT
GGTTTTCATATTAAGAATGTAATTATTTCCTTATTGTATTTTTTAGAAACAAAAGTCATA
TTTAAAATTCTCTTTGAAAGAAACAGGCAAGAAACAGGAAAGATTTTTTTAAGGAAATAT
GTTGGCAGGGCCCGTTTTAAAAGAACTGTAAATATATTTTCACTGTGTTCCTCGATGTAT
TTAATCCATAAAGTGAGAAAATTTTATCCGAAGAAACTCGCATTGGCAATACGAGTTTTC
AGTCCATTTGCCCGATTTTGTAGTAGCCACACTTGAATTTTCTGCTCTCTTAATGGATTT
TCTTTTCTGCAGTTTCACACGGTATAGCCCGCAGACTGGCGCCCCTGGCGTGCCTCCTGT
GTGTAATGTCATAACTAATAAACTCGACTCTTCCAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               64-876, gnl|bosTau2|chr6 (68759867-68759070)
               

               
               64-876, gnl|Hg17|chr4 (7879278-7878515)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-876, gnl|bosTau2|chr6 (68759867-68759070)
               

               
               64-876, gnl|Hg17|chr4 (7879278-7878515)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

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               cbe (0.478469)
               

               
               elu (0.385356)
               

               
               hyp (0.285673)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               elu (0.385356)
               

               
               hyp (0.285673)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	64-876, gnl\|bosTau2\|chr6 (68759867-68759070)
	64-876, gnl\|Hg17\|chr4 (7879278-7878515)

	cbe (0.478469)
	elu (0.385356)
	hyp (0.285673)
	aor (0.195274)
	cmu (0.186393)
	gul (0.177588)
	fbs (0.175346)
	rec (0.17307)
	eye (0.170503)
	csk (0.140746)
	cst (0.140036)
	lyg (0.133103)
	ova (0.129132)
	bla (0.124347)
	ebs (0.118301)
	ecc (0.115035)