Non-Coding RNA Search

Ss1.1-rcbe14_l24.5

Sequence:


               
               TTGCATTTGGAGAAAATATTGAAAGGAGGATATGTTGTTCCATTCACCTTGAAAAAACCC
AGAAGTAAATGGTGTTACAGTATCTCTGAATAGCTTGCTAAACGATTCAAGCAAGAAACA
TGAATTTTGTTCAATCCATCAGTATCTAGGAAAAACAAAAATTTTTAAAGAATCAATAGC
AAAATGTTAAAAAAAAAAAGTCCTATACACAAAGCCAAAATCAAAACCAATGTTTAAAAA
GTATTTCGTGATGAGCACAGGAAAAATTGTTGAAAAACCATCTCCTGGCAACCCATTTTC
CAACATGACATAGTTCACAACTCATGTCTCTAAATTAAACAGTTATTGGGAAACCCACGT
ACCATAATTAATACTACTCACATTAATCCTACCAAAAAAAAAAATTCTAACAACATAACT
ATGTAACCTGTGATTTCAATGATTGTCCTATATATATGTTATATATCATTAGGCCCATTA
TGGGCTAATAATTATGCCTTAAAAAATCAGAACTTTTCCCCCCATTATACTGATGTGGCC
ATTTACAGCACTTAGAATAAAAAGAGATTCTAAAATATTCAGCTAAAGTTTTATTGGAAA
GGGAATTGACATATTTTGAGAAATTGAAGGAGAAATTGAAAGTGGGTCTTTAAAATATGA
TCTAAATGAAAATTATTTGAGGATTCTTTTTCTGTTTTGTTCTCTTTTTCTTTTTTCTTT
TAAATTTCTACTTCTAGTTTGGCAGTGGAAAAGAATTGGGCTGTGAATTATTTTAAGGGA
TCAAAGAATTGGTATTAATTATATGATATTTAAGGACAAATTATATATTTTGCTGTTTAC
AGTAGTGACTCACTGAATGAAAAAAGTAATTGGCCAACATTAAGGATATTTCCAGTACAG
AAGGGTTCAAAACATTGCATTAAACTCTTTTGGGAAATGTATCTAAATTTTTTTTGAAAT
TCTGTTCTTATTCTACTTTTTGTTTGGTTGTATTTTTTTTCAGGTAGATTAATAAATCTG
GCAGCTGATTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCATTTGGAGAAAATATTGAAAGGAGGATATGTTGTTCCATTCACCTTGAAAAAACCC
AGAAGTAAATGGTGTTACAGTATCTCTGAATAGCTTGCTAAACGATTCAAGCAAGAAACA
TGAATTTTGTTCAATCCATCAGTATCTAGGAAAAACAAAAATTTTTAAAGAATCAATAGC
AAAATGTTAAAAAAAAAAAGTCCTATACACAAAGCCAAAATCAAAACCAATGTTTAAAAA
GTATTTCGTGATGAGCACAGGAAAAATTGTTGAAAAACCATCTCCTGGCAACCCATTTTC
CAACATGACATAGTTCACAACTCATGTCTCTAAATTAAACAGTTATTGGGAAACCCACGT
ACCATAATTAATACTACTCACATTAATCCTACCAAAAAAAAAAATTCTAACAACATAACT
ATGTAACCTGTGATTTCAATGATTGTCCTATATATATGTTATATATCATTAGGCCCATTA
TGGGCTAATAATTATGCCTTAAAAAATCAGAACTTTTCCCCCCATTATACTGATGTGGCC
ATTTACAGCACTTAGAATAAAAAGAGATTCTAAAATATTCAGCTAAAGTTTTATTGGAAA
GGGAATTGACATATTTTGAGAAATTGAAGGAGAAATTGAAAGTGGGTCTTTAAAATATGA
TCTAAATGAAAATTATTTGAGGATTCTTTTTCTGTTTTGTTCTCTTTTTCTTTTTTCTTT
TAAATTTCTACTTCTAGTTTGGCAGTGGAAAAGAATTGGGCTGTGAATTATTTTAAGGGA
TCAAAGAATTGGTATTAATTATATGATATTTAAGGACAAATTATATATTTTGCTGTTTAC
AGTAGTGACTCACTGAATGAAAAAAGTAATTGGCCAACATTAAGGATATTTCCAGTACAG
AAGGGTTCAAAACATTGCATTAAACTCTTTTGGGAAATGTATCTAAATTTTTTTTGAAAT
TCTGTTCTTATTCTACTTTTTGTTTGGTTGTATTTTTTTTCAGGTAGATTAATAAATCTG
GCAGCTGATTTC

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               629-1032, gnl|bosTau2|chr17 (30165267-30164856)
               

               
               629-1032, gnl|Hg17|chr7 (13706586-13706140)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               629-1032, gnl|bosTau2|chr17 (30165267-30164856)
               

               
               629-1032, gnl|Hg17|chr7 (13706586-13706140)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               cbe (0.956938)
               

               
               kid (0.259471)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               tra (0.123092)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.956938)
               

               
               kid (0.259471)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               tra (0.123092)

	629-1032, gnl\|bosTau2\|chr17 (30165267-30164856)
	629-1032, gnl\|Hg17\|chr7 (13706586-13706140)

	cbe (0.956938)
	kid (0.259471)
	sag (0.182715)
	fhi (0.169578)
	liv (0.146284)
	lin (0.145603)
	tra (0.123092)