Non-Coding RNA Search

Ss1.1-rcbe15_d1.5

Sequence:


               
               TCGTGTCTCAGGAGAGGGTAGGATTTAATTGAAGTTGCAATAGATCGGCAGTACCTAAAA
GTCTTTGAAACTGGGAGGAAAGTTCATTGTCACATGATGCAAATTCATTTTAAAATCACT
TCTAGTTATATGTTTTTATAAAATATGTGTCTTTGTGTTGCGTGTACGTGTGTAGAGATT
TTTTTGTTCTCGTTTCAGCCTCATAATGTTGAAAATAATAGCAAAAAATATGTATGCCAT
TAGTACAGATGTTGATTCCTAAATAAATAGTTTTATTGTTCGTCATCTGGTAATGCACTT
AGCTAAGATATTGTTCAGGTATACCAAGGGCTTTGAAAACAGACAAAAGCACATTGAAAC
AGACTAGAACTGTCAATTAGTGACTGTGCATTGTGCTAAGGACCAATCAGCCTTAAGTGC
AGTGGCACTAATGGGGTAGGTTTAGGTGAGTCCAAGTGAGTAGGACTGTGATTATTAGAC
CTAATAAATGGATTCACCCCCTAATCAAGTGTATGTAATAAAATGAATTTCACTTTTAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGTGTCTCAGGAGAGGGTAGGATTTAATTGAAGTTGCAATAGATCGGCAGTACCTAAAA
GTCTTTGAAACTGGGAGGAAAGTTCATTGTCACATGATGCAAATTCATTTTAAAATCACT
TCTAGTTATATGTTTTTATAAAATATGTGTCTTTGTGTTGCGTGTACGTGTGTAGAGATT
TTTTTGTTCTCGTTTCAGCCTCATAATGTTGAAAATAATAGCAAAAAATATGTATGCCAT
TAGTACAGATGTTGATTCCTAAATAAATAGTTTTATTGTTCGTCATCTGGTAATGCACTT
AGCTAAGATATTGTTCAGGTATACCAAGGGCTTTGAAAACAGACAAAAGCACATTGAAAC
AGACTAGAACTGTCAATTAGTGACTGTGCATTGTGCTAAGGACCAATCAGCCTTAAGTGC
AGTGGCACTAATGGGGTAGGTTTAGGTGAGTCCAAGTGAGTAGGACTGTGATTATTAGAC
CTAATAAATGGATTCACCCCCTAATCAAGTGTATGTAATAAAATGAATTTCACTTTTAAA
AAAAAAAAAAAA

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               4-537, gnl|bosTau2|chr25 (33796614-33797144)
               

               
               4-537, gnl|canFam2|chr13 (15791231-15791812)
               

               
               4-537, gnl|dasNov1|scaffold_66521 (5018-5603)
               

               
               4-537, gnl|echTel1|scaffold_320340 (71975-71379)
               

               
               4-537, gnl|hg17|chr8 (113707448-113708046)
               

               
               4-537, gnl|Hg17|chr8 (113708086-113707544)
               

               
               4-537, gnl|mm7|chr15 (47989335-47989917)
               

               
               4-537, gnl|Mm7|chr15 (47989957-47989427)
               

               
               4-537, gnl|monDom2|scaffold_3 (46047424-46046843)
               

               
               4-537, gnl|oryCun1|scaffold_199659 (88797-88229)
               

               
               4-537, gnl|panTro1|chr7_random (4235824-4236425)
               

               
               4-537, gnl|rheMac2|chr8 (115076892-115077506)
               

               
               4-537, gnl|rn3|chr7 (84042431-84042969)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-537, gnl|bosTau2|chr25 (33796614-33797144)
               

               
               4-537, gnl|canFam2|chr13 (15791231-15791812)
               

               
               4-537, gnl|dasNov1|scaffold_66521 (5018-5603)
               

               
               4-537, gnl|echTel1|scaffold_320340 (71975-71379)
               

               
               4-537, gnl|hg17|chr8 (113707448-113708046)
               

               
               4-537, gnl|Hg17|chr8 (113708086-113707544)
               

               
               4-537, gnl|mm7|chr15 (47989335-47989917)
               

               
               4-537, gnl|Mm7|chr15 (47989957-47989427)
               

               
               4-537, gnl|monDom2|scaffold_3 (46047424-46046843)
               

               
               4-537, gnl|oryCun1|scaffold_199659 (88797-88229)
               

               
               4-537, gnl|panTro1|chr7_random (4235824-4236425)
               

               
               4-537, gnl|rheMac2|chr8 (115076892-115077506)
               

               
               4-537, gnl|rn3|chr7 (84042431-84042969)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cbe (0.478469)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)

	4-537, gnl\|bosTau2\|chr25 (33796614-33797144)
	4-537, gnl\|canFam2\|chr13 (15791231-15791812)
	4-537, gnl\|dasNov1\|scaffold_66521 (5018-5603)
	4-537, gnl\|echTel1\|scaffold_320340 (71975-71379)
	4-537, gnl\|hg17\|chr8 (113707448-113708046)
	4-537, gnl\|Hg17\|chr8 (113708086-113707544)
	4-537, gnl\|mm7\|chr15 (47989335-47989917)
	4-537, gnl\|Mm7\|chr15 (47989957-47989427)
	4-537, gnl\|monDom2\|scaffold_3 (46047424-46046843)
	4-537, gnl\|oryCun1\|scaffold_199659 (88797-88229)
	4-537, gnl\|panTro1\|chr7_random (4235824-4236425)
	4-537, gnl\|rheMac2\|chr8 (115076892-115077506)
	4-537, gnl\|rn3\|chr7 (84042431-84042969)