Non-Coding RNA Search

Ss1.1-rcbe16_f23.5

Sequence:


               
               CTTACTTTGAAAAGTCAACAGCAAACCTAGCATTTTTTTGTGTGGGTTTTTTGTGTTTCT
TTTTCTTATAATAAAATCACAGAGCTCTGTCAGAATTCTTGGCAGGAATTTCAGTAAGCT
GTTAAAGAAGTGAATTTGGAAAACAAACCACTGCTTTAAAAACAAAATTTATTTCTTCTA
ATCGTCCATACACACATAGTAGTATGACAGCTATAGATTTGACTCTGGTATAAATTATAC
TGTATCCCAATTGCTAATTTAAAATTCTGCCTCATTCAATGATTGTATTAAACGCTCTTG
GATTTCGCAAACAATATAAATGATTGGAATGCTATTTAGGAACCTTGGTTTAGAATTATC
TAATATATAATAGTACAAATTAATTACAGCCCTACAGTATGATGATAAGATATGGTGTCT
GTAAATATGATGGTTTTTCACCATCTATTGGTTTTATTTGTATTGAGTTTGGGAAATTGG
AATTTTACTCAAATAGAATAGGGCATTTCCACTTTAGTTTCTCACATAGATTTTCTTTTA
CCTCTGTTTCTAACAGTTTTCTTCATTTTCATTTGTGGCAAGCATTCATACCAATGAGTT
TAATATAAATTCATATCTATATTTAAATTAACTGGGTTTATATATATGTCAAATTTAGTA
TAACAAATTTAGATCATCAATGAATACAAGTATGCTTTTTTAACATGAAACATATTTTAA
TATAGAAAAAAATCTAATGATGAAGTCGTATTGGTTGAGAAAAACTTTTTAACTGTTGGT
GATCATTGACTCTCCTTCCACTTCAGTATTATACTATGTGAATCCTGCACTGTGCAAAAA
CAAAGCATTTCCCTGTTAAAAATTAAAACCCGAAGTGCGAGGGGCTCATTCAGAATTGAG
AGACACTTGGAGTCAAGCAAGAGCAATGTGATATACTCTATTTTATTATGTTTTTATATA
GATACTCATAAATTGTTCAGAAATGAAAAAATTTGACACATTCTAACACTACAATCAATT
TTTCTAATTTACATAAATAAAACTAATTTTATCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTACTTTGAAAAGTCAACAGCAAACCTAGCATTTTTTTGTGTGGGTTTTTTGTGTTTCT
TTTTCTTATAATAAAATCACAGAGCTCTGTCAGAATTCTTGGCAGGAATTTCAGTAAGCT
GTTAAAGAAGTGAATTTGGAAAACAAACCACTGCTTTAAAAACAAAATTTATTTCTTCTA
ATCGTCCATACACACATAGTAGTATGACAGCTATAGATTTGACTCTGGTATAAATTATAC
TGTATCCCAATTGCTAATTTAAAATTCTGCCTCATTCAATGATTGTATTAAACGCTCTTG
GATTTCGCAAACAATATAAATGATTGGAATGCTATTTAGGAACCTTGGTTTAGAATTATC
TAATATATAATAGTACAAATTAATTACAGCCCTACAGTATGATGATAAGATATGGTGTCT
GTAAATATGATGGTTTTTCACCATCTATTGGTTTTATTTGTATTGAGTTTGGGAAATTGG
AATTTTACTCAAATAGAATAGGGCATTTCCACTTTAGTTTCTCACATAGATTTTCTTTTA
CCTCTGTTTCTAACAGTTTTCTTCATTTTCATTTGTGGCAAGCATTCATACCAATGAGTT
TAATATAAATTCATATCTATATTTAAATTAACTGGGTTTATATATATGTCAAATTTAGTA
TAACAAATTTAGATCATCAATGAATACAAGTATGCTTTTTTAACATGAAACATATTTTAA
TATAGAAAAAAATCTAATGATGAAGTCGTATTGGTTGAGAAAAACTTTTTAACTGTTGGT
GATCATTGACTCTCCTTCCACTTCAGTATTATACTATGTGAATCCTGCACTGTGCAAAAA
CAAAGCATTTCCCTGTTAAAAATTAAAACCCGAAGTGCGAGGGGCTCATTCAGAATTGAG
AGACACTTGGAGTCAAGCAAGAGCAATGTGATATACTCTATTTTATTATGTTTTTATATA
GATACTCATAAATTGTTCAGAAATGAAAAAATTTGACACATTCTAACACTACAATCAATT
TTTCTAATTTACATAAATAAAACTAATTTTATCAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-1050, gnl|bosTau2|chr21 (26428371-26427313)
               

               
               1-1050, gnl|Hg17|chr14 (30832137-30830753)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1050, gnl|bosTau2|chr21 (26428371-26427313)
               

               
               1-1050, gnl|Hg17|chr14 (30832137-30830753)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               ret (0.514933)
               

               
               tra (0.492368)
               

               
               aor (0.390549)
               

               
               fhi (0.339155)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.514933)
               

               
               tra (0.492368)
               

               
               aor (0.390549)
               

               
               fhi (0.339155)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	1-1050, gnl\|bosTau2\|chr21 (26428371-26427313)
	1-1050, gnl\|Hg17\|chr14 (30832137-30830753)

	ret (0.514933)
	tra (0.492368)
	aor (0.390549)
	fhi (0.339155)
	cbe (0.239234)
	hea (0.204499)
	fli (0.202881)
	gul (0.177588)
	mga (0.160205)
	lin (0.145603)
	kid (0.129735)
	jej (0.0989218)
	ldo (0.0970026)