Non-Coding RNA Search

Ss1.1-rcbe16_j13.5

Sequence:


               
               CGACGGCGCGCCCCCAACCCAGCCCGGATCCCCCATGATGGGGGCCCTCCGGGGCAGACA
AACCACACAGCCAAGGGATTCGAATTAACTCAGCCATTTTTGGAGAACCTTGGGGAAAAT
GGAAATTTCAAAAAAAAAAAAAAAAAAACATTTTTAAAAGAAAAACGGGGAGAAAAAAAA
TTGCTTCTATTGATGAGTTTTATCATCTCAATTGAATCTTTCCTTTCCCTGGTGAACGCG
AGCTGGTGGCCCGTGTGTGGCGAAAAAGGCAGAAGCGAAGTGGAAACCCAGCGTCCCACA
CAGACCTCCACCAGACACACTCATACCCCACACACGTTCTCAGACACACACAGGAGTGCT
TGCTGGTTATACCAAACCCTACTATTACTGCCTGCAGAAATCAATTTAAAACAAATAAAC
AATTTTAAAAAGGACAAAAAAATTAATGATTGAGAAAAGAAGCATTTTTTTCTGACATTT
GGTCCTGCTTGAAATAACAAAAAGAAAAAAGAAAAAAAAAAAAAAACACCACCGATTTCC
TTTGCTTCTTTTTTCCTTTTTCCTACCTTGTTTGAAAACTGTGGGCTTGGGACTGTGAAT
TATTGCATGACATTCAAAAAGAGAAAAAAAATAAAAAAAGTTGGTTCAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACGGCGCGCCCCCAACCCAGCCCGGATCCCCCATGATGGGGGCCCTCCGGGGCAGACA
AACCACACAGCCAAGGGATTCGAATTAACTCAGCCATTTTTGGAGAACCTTGGGGAAAAT
GGAAATTTCAAAAAAAAAAAAAAAAAAACATTTTTAAAAGAAAAACGGGGAGAAAAAAAA
TTGCTTCTATTGATGAGTTTTATCATCTCAATTGAATCTTTCCTTTCCCTGGTGAACGCG
AGCTGGTGGCCCGTGTGTGGCGAAAAAGGCAGAAGCGAAGTGGAAACCCAGCGTCCCACA
CAGACCTCCACCAGACACACTCATACCCCACACACGTTCTCAGACACACACAGGAGTGCT
TGCTGGTTATACCAAACCCTACTATTACTGCCTGCAGAAATCAATTTAAAACAAATAAAC
AATTTTAAAAAGGACAAAAAAATTAATGATTGAGAAAAGAAGCATTTTTTTCTGACATTT
GGTCCTGCTTGAAATAACAAAAAGAAAAAAGAAAAAAAAAAAAAAACACCACCGATTTCC
TTTGCTTCTTTTTTCCTTTTTCCTACCTTGTTTGAAAACTGTGGGCTTGGGACTGTGAAT
TATTGCATGACATTCAAAAAGAGAAAAAAAATAAAAAAAGTTGGTTCAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               64-180, - strand, RNAz p=0.876595
               

               
               444-562, - strand, RNAz p=0.7329

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               64-180, - strand, RNAz p=0.876595
               

               
               444-562, - strand, RNAz p=0.7329

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-650, gnl|bosTau2|chr7 (9380098-9379437)
               

               
               1-650, gnl|Hg17|chr19 (13178923-13178256)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-650, gnl|bosTau2|chr7 (9380098-9379437)
               

               
               1-650, gnl|Hg17|chr19 (13178923-13178256)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cbe (0.717703)
               

               
               fce (0.543183)
               

               
               ece (0.229305)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               fce (0.543183)
               

               
               ece (0.229305)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	64-180, - strand, RNAz p=0.876595
	444-562, - strand, RNAz p=0.7329

	1-650, gnl\|bosTau2\|chr7 (9380098-9379437)
	1-650, gnl\|Hg17\|chr19 (13178923-13178256)

	cbe (0.717703)
	fce (0.543183)
	ece (0.229305)
	hyp (0.142837)
	ecc (0.115035)
	spc (0.113366)
	eje (0.0988338)