Non-Coding RNA Search

Ss1.1-rcbe19_h18.5

Sequence:


               
               AAAACTCCCAAGTGTGAAGTCTTGAAGAGAAACAGCTATAGAGATGAGTCTAGACACCTT
AAAAAGAAGAAAGAGCTAAGCTGTTGTACCAGCAATTCTTATTTCTCCTGCGAACGTCAT
GCCTTTTCAAGATGTGATGCAAGGAGTAAGGTATTTGTGCCTTTTTATAATCACGTCTAT
TATGAGAAAAATAAAAATCAAGTTGCTCACAGTTGAGGCCGCCTCGTTGCACTAGATATA
AAAACAGCCCAGACTTACAGCCGAGGCTTCTCTGCATGACGCAGTGCTTGAGCACCTGTG
ATGACATATCGGAATGATGGTTTGCCAAGCGTACATGGATATCTGAAGACTTTATTTTTG
CAGTCAGAACCTTAGGCTGGACCTGAGTCTGTGGGTGTAAACCATATGGCGTCTGTATCG
TGCGTAGATGCGGACGAAAGAAAGCAAGATCTTTGCATTTTCGTTGTAAGATTGTTTTTT
TCCTCTTTATACTTAGGCTGGTAGTAGATAGTTTGCAAATGGTGGTTGATGTGGCATACT
TTTAAACTGTATTGTTTTAGCTTGAATATTCTATACTAAACTTTTACAGAATATGACATG
CTAAGTCACTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACTCCCAAGTGTGAAGTCTTGAAGAGAAACAGCTATAGAGATGAGTCTAGACACCTT
AAAAAGAAGAAAGAGCTAAGCTGTTGTACCAGCAATTCTTATTTCTCCTGCGAACGTCAT
GCCTTTTCAAGATGTGATGCAAGGAGTAAGGTATTTGTGCCTTTTTATAATCACGTCTAT
TATGAGAAAAATAAAAATCAAGTTGCTCACAGTTGAGGCCGCCTCGTTGCACTAGATATA
AAAACAGCCCAGACTTACAGCCGAGGCTTCTCTGCATGACGCAGTGCTTGAGCACCTGTG
ATGACATATCGGAATGATGGTTTGCCAAGCGTACATGGATATCTGAAGACTTTATTTTTG
CAGTCAGAACCTTAGGCTGGACCTGAGTCTGTGGGTGTAAACCATATGGCGTCTGTATCG
TGCGTAGATGCGGACGAAAGAAAGCAAGATCTTTGCATTTTCGTTGTAAGATTGTTTTTT
TCCTCTTTATACTTAGGCTGGTAGTAGATAGTTTGCAAATGGTGGTTGATGTGGCATACT
TTTAAACTGTATTGTTTTAGCTTGAATATTCTATACTAAACTTTTACAGAATATGACATG
CTAAGTCACTAC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-612, gnl|bosTau2|chr13 (39308785-39308193)
               

               
               1-612, gnl|Hg17|chr20 (56375321-56375909)
               

               
               1-612, gnl|Mm7|chr2 (173451147-173451657)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-612, gnl|bosTau2|chr13 (39308785-39308193)
               

               
               1-612, gnl|Hg17|chr20 (56375321-56375909)
               

               
               1-612, gnl|Mm7|chr2 (173451147-173451657)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               gul (0.355177)
               

               
               vin (0.332557)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               vin (0.332557)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)

	1-612, gnl\|bosTau2\|chr13 (39308785-39308193)
	1-612, gnl\|Hg17\|chr20 (56375321-56375909)
	1-612, gnl\|Mm7\|chr2 (173451147-173451657)

	gul (0.355177)
	vin (0.332557)
	bla (0.248694)
	tra (0.246184)
	cbe (0.239234)
	isp (0.150376)
	liv (0.146284)
	hyp (0.142837)
	sug (0.127291)