Non-Coding RNA Search

Ss1.1-rcbe20_d7.5

Sequence:


               
               TAAGAAAAAAAAAAAAATGGCTGTTTCGGCCTCTATGGGACTGTAATGCGCTTAGTGGTC
TGACATATACTGGAAATGTATGTATACTGGCGTCCTTTATATTCTCTGAAATGCTTAATG
CCTTTGAAATTTTGTAATCAAAAAAAAGCTTTGAAAAAATCTAAAGGGGAGAGTATTCTT
AAACGTTTTTAACATAAGCTTGTCAGTACACACATAGATGGTTAGCATGTTTAGCAAACC
TTGTGAAATTTAAATAAGTTTGTAGTTACATGTGAAACTCTAAATGCATGGTAACTGTTA
ATGTCATTAACGGTTTAGTTCTTTTGTTCCGTTCTGTCATGTGCCACCAAATACGTTCTT
TTTTCACCTTTTTTCCCTTTGTATATCAGTTACGGGTTACAACTGGTTCATTCTGAAAAC
AACAACAAAAATCCATTCATATTTTTTAACAATTGTATAAGTGCCCAAGTAATTCACTAC
AGCCTAAAGCCTTGCCTTTGTAATTTGACTTCTGAAATGTTGGCAATCAAAGCATGCACT
TGTAACAATAACAAAGAAAACAAAAGCATTTTATATTACTACTCAATAAAATGTGCATGA
ACTTAAAAGAACGCTCATCGTTTCCCTGAGTCTGCTAAAGGGATTTCTGGGCACAACCAC
CATGCCACCTTCCGGATGCTGGGCCCACCACCACGCATCACAGATTTACTTTAACTGGCT
TCTCTGAGGGCCTCGTGATCCAAGGTGTGGCGCCTACTTTGGCTGTAAGAATCCTGGTGG
ATTTGTGTCTCAAATCAGACAAGAGAATCATATTCAAAGAGCAAATGCCACCTTCCGGCT
CCCTCGAATGTGGGAGCCAGTTAAGACACCAGAGCATTCCTTTGTATTGAAAAAAAATAT
TGTAATCAGGTTGTTTCAGTTGTATTGGATGCCCTATCTGCTAAATCAAAAGGAACTAAG
CTGCTAAGTGCATTTTCGTTCCAGAAGAGAGTTGCATTTGTATCGATAACAAAATTTGTA
TACCGGCGCTTCAGCTAATATCTAATCACCTGGAGATTTCCCATACACCAAATTTCAGTT
TGTTTCTGACATCGTTCATTTTCAGTGCACTTTGTTTTATGTAATAAAATATGCCTGTTA
TATTAAATAATAAGAAAATGGCAATTAGCGATATAGGGTACCAAAACAAACATGTTCTAG
ATATATTCTCTGACAAAGACTATCCCACATTTATTTTGATGAATTCAAACATTTTTTGTC
CTGTGGATATTCTTCCATCCTTAAAAAAAAAAAAAAGTGACACCCAAGGAAACTATTTAG
ATGCAACTTATTACACTGATATGAAAGAAATGGTAATTCTGGTACCAAGGTGTTTATTTT
CTTTCTTACAACTGCAGAGAAAATATCCTGACAAAAAAATAAATAAATCTTTTTTTTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGAAAAAAAAAAAAATGGCTGTTTCGGCCTCTATGGGACTGTAATGCGCTTAGTGGTC
TGACATATACTGGAAATGTATGTATACTGGCGTCCTTTATATTCTCTGAAATGCTTAATG
CCTTTGAAATTTTGTAATCAAAAAAAAGCTTTGAAAAAATCTAAAGGGGAGAGTATTCTT
AAACGTTTTTAACATAAGCTTGTCAGTACACACATAGATGGTTAGCATGTTTAGCAAACC
TTGTGAAATTTAAATAAGTTTGTAGTTACATGTGAAACTCTAAATGCATGGTAACTGTTA
ATGTCATTAACGGTTTAGTTCTTTTGTTCCGTTCTGTCATGTGCCACCAAATACGTTCTT
TTTTCACCTTTTTTCCCTTTGTATATCAGTTACGGGTTACAACTGGTTCATTCTGAAAAC
AACAACAAAAATCCATTCATATTTTTTAACAATTGTATAAGTGCCCAAGTAATTCACTAC
AGCCTAAAGCCTTGCCTTTGTAATTTGACTTCTGAAATGTTGGCAATCAAAGCATGCACT
TGTAACAATAACAAAGAAAACAAAAGCATTTTATATTACTACTCAATAAAATGTGCATGA
ACTTAAAAGAACGCTCATCGTTTCCCTGAGTCTGCTAAAGGGATTTCTGGGCACAACCAC
CATGCCACCTTCCGGATGCTGGGCCCACCACCACGCATCACAGATTTACTTTAACTGGCT
TCTCTGAGGGCCTCGTGATCCAAGGTGTGGCGCCTACTTTGGCTGTAAGAATCCTGGTGG
ATTTGTGTCTCAAATCAGACAAGAGAATCATATTCAAAGAGCAAATGCCACCTTCCGGCT
CCCTCGAATGTGGGAGCCAGTTAAGACACCAGAGCATTCCTTTGTATTGAAAAAAAATAT
TGTAATCAGGTTGTTTCAGTTGTATTGGATGCCCTATCTGCTAAATCAAAAGGAACTAAG
CTGCTAAGTGCATTTTCGTTCCAGAAGAGAGTTGCATTTGTATCGATAACAAAATTTGTA
TACCGGCGCTTCAGCTAATATCTAATCACCTGGAGATTTCCCATACACCAAATTTCAGTT
TGTTTCTGACATCGTTCATTTTCAGTGCACTTTGTTTTATGTAATAAAATATGCCTGTTA
TATTAAATAATAAGAAAATGGCAATTAGCGATATAGGGTACCAAAACAAACATGTTCTAG
ATATATTCTCTGACAAAGACTATCCCACATTTATTTTGATGAATTCAAACATTTTTTGTC
CTGTGGATATTCTTCCATCCTTAAAAAAAAAAAAAAGTGACACCCAAGGAAACTATTTAG
ATGCAACTTATTACACTGATATGAAAGAAATGGTAATTCTGGTACCAAGGTGTTTATTTT
CTTTCTTACAACTGCAGAGAAAATATCCTGACAAAAAAATAAATAAATCTTTTTTTTTGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               191-310, - strand, RNAz p=0.594359
               

               
               778-925, + strand, RNAz p=0.922605

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               191-310, - strand, RNAz p=0.594359
               

               
               778-925, + strand, RNAz p=0.922605

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC025714, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC025714, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-1422, gnl|bosTau2|chr15 (41483201-41481792)
               

               
               7-1422, gnl|Hg17|chr4 (102303260-102301846)
               

               
               7-1422, gnl|Mm7|chr3 (136730492-136731893)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-1422, gnl|bosTau2|chr15 (41483201-41481792)
               

               
               7-1422, gnl|Hg17|chr4 (102303260-102301846)
               

               
               7-1422, gnl|Mm7|chr3 (136730492-136731893)

Expressed library(ies): 24 entry(ies)

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Expressed library(ies): 24 entry(ies)

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               fco (1.57208)
               

               
               pro (0.512033)
               

               
               tbr (0.462535)
               

               
               mgm (0.360685)
               

               
               rec (0.346141)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               ret (0.257467)
               

               
               cbr (0.255951)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               ova (0.129132)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.57208)
               

               
               pro (0.512033)
               

               
               tbr (0.462535)
               

               
               mgm (0.360685)
               

               
               rec (0.346141)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               ret (0.257467)
               

               
               cbr (0.255951)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               ova (0.129132)

	191-310, - strand, RNAz p=0.594359
	778-925, + strand, RNAz p=0.922605

	7-1422, gnl\|bosTau2\|chr15 (41483201-41481792)
	7-1422, gnl\|Hg17\|chr4 (102303260-102301846)
	7-1422, gnl\|Mm7\|chr3 (136730492-136731893)

	fco (1.57208)
	pro (0.512033)
	tbr (0.462535)
	mgm (0.360685)
	rec (0.346141)
	sme (0.305437)
	isp (0.300752)
	ret (0.257467)
	cbr (0.255951)
	cbe (0.239234)
	mgp (0.230681)
	aor (0.195274)
	ldo (0.194005)
	cmu (0.186393)
	sag (0.182715)
	sin (0.174948)
	nje (0.16592)
	ski (0.146735)
	liv (0.146284)
	hyp (0.142837)
	lnt (0.142308)
	csk (0.140746)
	ste (0.135208)
	ova (0.129132)