Non-Coding RNA Search

Ss1.1-rcbe22_f24.5

Sequence:


               
               TTCAGAACGGAAACCTGATTGCAAATAACTAGACACCAATGTAGAACCCTTATTAAACAT
TATTTGCTTAGAGTGATTATGTATTTAATCAGAGACTGAAAAGCAAAACTCAGGGTTTGG
TAAATTAGCATAAAGAAAAGAATGCACCAATCATAATCTTTTGTGTAAAAATGAAAAGAC
TTTGGTTTTATGAATTTGTTTTAGTTATTTAAAAAAGCAAGTAGTACACTAAATTAAACT
TATTATTTTATTGCTTATAATTTATTAAGAATTTTTATGCATGTATAAGGATTTCATTAT
ATACATTATGTGTCATTTGTGATATGTATATCATATCTGACTGCCTAAATTGCTTAAAAG
CTTTATTTCACTTCAGTAGAATTCAATTCCTGAGAGCACCATAATTGTAATAAAGTGAAA
TCTAGATATAAAGTGAGATACAGATGTAAATTCAATAACTCCAGGGCCAAAGAATATTAG
GTATTTTAGGAAGGAATTTTTATACTTACTCCTGTTACAGTCTTCACTTTGAATTTCTCT
CTCCTCTTGTGGAAGTGCTGGTGAATGTTACTTTATGTTTATTCCCTTATTTACTCTTTC
TCAATGGGAGAGGAAATGGATTAGTCACACCAACATTCTTGGTGTGACCCACTAAGAAGA
CCATTATCTTCTCAGTGGGTTGGGGTCAGTGCTCATCTAGTGTATCTCTCATCTCCTCTT
CTATATGGTGACCACGAAAGGTCAAGCATGAAGATGACACACTGAGGATAGCAGGATGCA
CAGATTGAAGGCACCTGAACTGTGCTTCTGAATTAACCAATGCTCAAACTGCTTTACCTT
TGGACTTTTTGTTGTATAATAAATTCCTTATATTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAGAACGGAAACCTGATTGCAAATAACTAGACACCAATGTAGAACCCTTATTAAACAT
TATTTGCTTAGAGTGATTATGTATTTAATCAGAGACTGAAAAGCAAAACTCAGGGTTTGG
TAAATTAGCATAAAGAAAAGAATGCACCAATCATAATCTTTTGTGTAAAAATGAAAAGAC
TTTGGTTTTATGAATTTGTTTTAGTTATTTAAAAAAGCAAGTAGTACACTAAATTAAACT
TATTATTTTATTGCTTATAATTTATTAAGAATTTTTATGCATGTATAAGGATTTCATTAT
ATACATTATGTGTCATTTGTGATATGTATATCATATCTGACTGCCTAAATTGCTTAAAAG
CTTTATTTCACTTCAGTAGAATTCAATTCCTGAGAGCACCATAATTGTAATAAAGTGAAA
TCTAGATATAAAGTGAGATACAGATGTAAATTCAATAACTCCAGGGCCAAAGAATATTAG
GTATTTTAGGAAGGAATTTTTATACTTACTCCTGTTACAGTCTTCACTTTGAATTTCTCT
CTCCTCTTGTGGAAGTGCTGGTGAATGTTACTTTATGTTTATTCCCTTATTTACTCTTTC
TCAATGGGAGAGGAAATGGATTAGTCACACCAACATTCTTGGTGTGACCCACTAAGAAGA
CCATTATCTTCTCAGTGGGTTGGGGTCAGTGCTCATCTAGTGTATCTCTCATCTCCTCTT
CTATATGGTGACCACGAAAGGTCAAGCATGAAGATGACACACTGAGGATAGCAGGATGCA
CAGATTGAAGGCACCTGAACTGTGCTTCTGAATTAACCAATGCTCAAACTGCTTTACCTT
TGGACTTTTTGTTGTATAATAAATTCCTTATATTGT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-876, gnl|bosTau2|chr21 (33614573-33615451)
               

               
               1-876, gnl|Hg17|chr14 (38689115-38686960)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-876, gnl|bosTau2|chr21 (33614573-33615451)
               

               
               1-876, gnl|Hg17|chr14 (38689115-38686960)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               cbe (0.478469)
               

               
               lnt (0.284616)
               

               
               lyg (0.266205)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pgl (0.118483)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               lnt (0.284616)
               

               
               lyg (0.266205)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pgl (0.118483)

	1-876, gnl\|bosTau2\|chr21 (33614573-33615451)
	1-876, gnl\|Hg17\|chr14 (38689115-38686960)

	cbe (0.478469)
	lnt (0.284616)
	lyg (0.266205)
	aor (0.195274)
	sto (0.179824)
	fbs (0.175346)
	fhi (0.169578)
	cag (0.151194)
	spl (0.143184)
	hyp (0.142837)
	pgl (0.118483)