Non-Coding RNA Search

Ss1.1-rcbe27_d11.5

Sequence:


               
               GATATGATTAACATCAAATAAAAGTCACCCCAAACTGCAGTTGAGAGCTTCTTAAGATTT
TCATTTATATCGAATTACAATTACTTGATTTTTTTATCTTGAATAGGCTAATGTTGAGCC
TTTTTTAATGGGATGTGATCTTTGTAGACCCTCCATTCCAAAGGACAAAATCAGCAATCC
AGAAAAACTGGGTACAGAATAATTGTGATACATGCATCCACCAAATAATTTTCTTTCTCT
CTGGTCATTCAAGTGATGGATGGCTTCTACTTGGATGCCTGTCTGTGCAGATAAAGAATG
GTTTACAGATTGCCAAATAAAATTCAAAAGAAGAAAATGCTCGTCTGGAAGGTACCCAGT
GATAAACTGGTTTGCAAAAGAATCTCTGAAGAAGATCAGTAAAATTTATCTTTTTGGAAC
CAGTGGTTCCATGGCCAGAATAAAAGATGATAAGAACAAGCTTAAAGTGTAAGAGGGAGT
AATTTATGGGAAAATGATTTTATGGTGGAATAATAGATCTGAAGACTTATGGACTCATAA
GACAGAAAATGGAATAAAAGCTGTCAAGCAACAGTGAACATGGGAGACATTTTAATAAAC
ATCGAAATCTGACATCACTAGGAAAAAAATTGTGATAAAAGCAGAAAACATTTTTGTCAT
GCCTCTGAAAATCATGGTGCAACCACATCTGGGAAAGAATGTCCAGTCCTGATTGCTGTA
CCTTGAGGAAGCTGTAATTCAAGTTGTGAAGGACCACAGTTTGGTAAGAAGGAAACTGAT
AGAATCAAAGTACATAAAATTATAAATTATGTGTGGGGAAGATGGCACAGGGAGGAACAG
GGACTTGATGTATATCCATACGAGAATATTCAGCTTAGAGATACACTAACAACCATTAAA
GAAATTATTTTAAAACAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATATGATTAACATCAAATAAAAGTCACCCCAAACTGCAGTTGAGAGCTTCTTAAGATTT
TCATTTATATCGAATTACAATTACTTGATTTTTTTATCTTGAATAGGCTAATGTTGAGCC
TTTTTTAATGGGATGTGATCTTTGTAGACCCTCCATTCCAAAGGACAAAATCAGCAATCC
AGAAAAACTGGGTACAGAATAATTGTGATACATGCATCCACCAAATAATTTTCTTTCTCT
CTGGTCATTCAAGTGATGGATGGCTTCTACTTGGATGCCTGTCTGTGCAGATAAAGAATG
GTTTACAGATTGCCAAATAAAATTCAAAAGAAGAAAATGCTCGTCTGGAAGGTACCCAGT
GATAAACTGGTTTGCAAAAGAATCTCTGAAGAAGATCAGTAAAATTTATCTTTTTGGAAC
CAGTGGTTCCATGGCCAGAATAAAAGATGATAAGAACAAGCTTAAAGTGTAAGAGGGAGT
AATTTATGGGAAAATGATTTTATGGTGGAATAATAGATCTGAAGACTTATGGACTCATAA
GACAGAAAATGGAATAAAAGCTGTCAAGCAACAGTGAACATGGGAGACATTTTAATAAAC
ATCGAAATCTGACATCACTAGGAAAAAAATTGTGATAAAAGCAGAAAACATTTTTGTCAT
GCCTCTGAAAATCATGGTGCAACCACATCTGGGAAAGAATGTCCAGTCCTGATTGCTGTA
CCTTGAGGAAGCTGTAATTCAAGTTGTGAAGGACCACAGTTTGGTAAGAAGGAAACTGAT
AGAATCAAAGTACATAAAATTATAAATTATGTGTGGGGAAGATGGCACAGGGAGGAACAG
GGACTTGATGTATATCCATACGAGAATATTCAGCTTAGAGATACACTAACAACCATTAAA
GAAATTATTTTAAAACAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               650-768, - strand, RNAz p=0.546024

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               650-768, - strand, RNAz p=0.546024

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               19-523, gnl|bosTau2|chr3 (28602295-28602794)
               

               
               19-523, gnl|Hg17|chr1 (111372011-111371515)
               

               
               19-523, gnl|Mm7|chr3 (106392967-106393612)
               


               
               650-922, gnl|bosTau2|chr3 (28603006-28603263)
               

               
               650-922, gnl|Hg17|chr1 (111371301-111371063)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-523, gnl|bosTau2|chr3 (28602295-28602794)
               

               
               19-523, gnl|Hg17|chr1 (111372011-111371515)
               

               
               19-523, gnl|Mm7|chr3 (106392967-106393612)
               


               
               650-922, gnl|bosTau2|chr3 (28603006-28603263)
               

               
               650-922, gnl|Hg17|chr1 (111371301-111371063)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cbe (0.478469)
               

               
               mga (0.32041)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               mga (0.32041)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)

	19-523, gnl\|bosTau2\|chr3 (28602295-28602794)
	19-523, gnl\|Hg17\|chr1 (111372011-111371515)
	19-523, gnl\|Mm7\|chr3 (106392967-106393612)

	650-922, gnl\|bosTau2\|chr3 (28603006-28603263)
	650-922, gnl\|Hg17\|chr1 (111371301-111371063)

	cbe (0.478469)
	mga (0.32041)
	mgp (0.230681)
	sag (0.182715)
	sin (0.174948)
	mcp (0.170648)
	lnt (0.142308)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)