Non-Coding RNA Search

Ss1.1-rcbe27_f21.5

Sequence:


               
               CCTGTGATACCAAATCTTCAGCTATCTACTTGGAAGAACATGGAATAACCATACTTAACA
GTGAAAGGAATCTTTAATTATGTATTATATCTGTAATATATTTATTTTGTTTAAAGAAGG
CTTTCTAACAATGACTGACTAAATAAAGCTGTCTGCTCCTGCATTGATAATGAAGATGCG
TTGTATTTGATACCCCGCCCCCCCTTTTTTTGGCAAAGGAGGGGAAAGGAAGGTTTAAAA
TAACTGATTAAAAATGTCACTAAATGTAGACTAATGACTGTATAGAGATGTGAAATGTAT
AATTACATATGGAAGCAATATGTTGCTGTGTTGTTAGATTTTTTTGTTTTTGTTTTCTAC
TTATTTTAAAGATGTTTGGGAATTTGAACAATTAGGACGTGACAGACCACGTCATATTCA
TTTGAGTCTATTTGGACAACTTTAAACCAATATATCTATAGCTTTAGATTATATTCGATA
AAAGTAATTGGACTTTTTCCTTTTTTCTTTTTTTTTGACTTGTTGACAAGTGTCTTTGTA
ATATGTTTTTAATCCCTTTTTATTGTATTATAGAGAGATGAACAAATTAAATTTGGCCTC
AAAGAGAGAGCTTAATCCCTTCTGGATATTTTTCCTGCATTTCTTTGCAAAGGGAGATGC
ATACCTTTGGGCAGTTTGGTCATGATAAGAAATTATGGGCTATTTTTTGGCATGTTCTTT
GGGAGCCGTACAGATTCAGGGGAGGCTTCGTCCCACTGTGCAAGTCAAGTCTTTGACAAG
ACAAGGACAGCAGAGGAGGATTTGCAAGGGCCTCTCTCTGAAAATCAGAAAGAATGGACT
CTCACCTGTGATGAGGACTTGCTTTCTTTACCTCTGGTTCTTTCCGTGTCTTAGTTGGAT
GTTCCTGAAATGGACACAGGCTGTGCCATTGTGCCAGAAACATTGTGTTACCTTTTCTGT
TGTTGTTGTTGCTGTTAAACTATGATGTGTGACTCCTTTTTTTAATAATTTTTTGTTTGT
TTGTTTGAATGCTTTAAAAATCTTTTAAGTCTGTGGATCTGCTGATGTACAGTGCCTTTG
CTGCTATGGATCAAAATCAAGAGAACTGTGTAGATAAACTTTATTGTATAAGTAGAAAAT
TACTTAATTTCTTACTAGAAATGGATGGATGCTGCAAGTTGAAATGGACTGTCCATTGAC
GTTCCTAACGTGGTAGCAGAAAAAAAAAAAAAAAGATGGTGTCTTAAGTGCTTAGTGTTT
GATGTCATTAACAGTTTCGTAAAACTCTACAGTGTAGAAAGATTTTGATACTAAACTGTG
CATTGTACATAGTTCTAATGCATTGTATTGACCACCAGTCCTTCTATAATGGTAGATTGT
TTGTGCATTCAGACTTTTAAGCATTAAACATAAATAACTTCTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGTGATACCAAATCTTCAGCTATCTACTTGGAAGAACATGGAATAACCATACTTAACA
GTGAAAGGAATCTTTAATTATGTATTATATCTGTAATATATTTATTTTGTTTAAAGAAGG
CTTTCTAACAATGACTGACTAAATAAAGCTGTCTGCTCCTGCATTGATAATGAAGATGCG
TTGTATTTGATACCCCGCCCCCCCTTTTTTTGGCAAAGGAGGGGAAAGGAAGGTTTAAAA
TAACTGATTAAAAATGTCACTAAATGTAGACTAATGACTGTATAGAGATGTGAAATGTAT
AATTACATATGGAAGCAATATGTTGCTGTGTTGTTAGATTTTTTTGTTTTTGTTTTCTAC
TTATTTTAAAGATGTTTGGGAATTTGAACAATTAGGACGTGACAGACCACGTCATATTCA
TTTGAGTCTATTTGGACAACTTTAAACCAATATATCTATAGCTTTAGATTATATTCGATA
AAAGTAATTGGACTTTTTCCTTTTTTCTTTTTTTTTGACTTGTTGACAAGTGTCTTTGTA
ATATGTTTTTAATCCCTTTTTATTGTATTATAGAGAGATGAACAAATTAAATTTGGCCTC
AAAGAGAGAGCTTAATCCCTTCTGGATATTTTTCCTGCATTTCTTTGCAAAGGGAGATGC
ATACCTTTGGGCAGTTTGGTCATGATAAGAAATTATGGGCTATTTTTTGGCATGTTCTTT
GGGAGCCGTACAGATTCAGGGGAGGCTTCGTCCCACTGTGCAAGTCAAGTCTTTGACAAG
ACAAGGACAGCAGAGGAGGATTTGCAAGGGCCTCTCTCTGAAAATCAGAAAGAATGGACT
CTCACCTGTGATGAGGACTTGCTTTCTTTACCTCTGGTTCTTTCCGTGTCTTAGTTGGAT
GTTCCTGAAATGGACACAGGCTGTGCCATTGTGCCAGAAACATTGTGTTACCTTTTCTGT
TGTTGTTGTTGCTGTTAAACTATGATGTGTGACTCCTTTTTTTAATAATTTTTTGTTTGT
TTGTTTGAATGCTTTAAAAATCTTTTAAGTCTGTGGATCTGCTGATGTACAGTGCCTTTG
CTGCTATGGATCAAAATCAAGAGAACTGTGTAGATAAACTTTATTGTATAAGTAGAAAAT
TACTTAATTTCTTACTAGAAATGGATGGATGCTGCAAGTTGAAATGGACTGTCCATTGAC
GTTCCTAACGTGGTAGCAGAAAAAAAAAAAAAAAGATGGTGTCTTAAGTGCTTAGTGTTT
GATGTCATTAACAGTTTCGTAAAACTCTACAGTGTAGAAAGATTTTGATACTAAACTGTG
CATTGTACATAGTTCTAATGCATTGTATTGACCACCAGTCCTTCTATAATGGTAGATTGT
TTGTGCATTCAGACTTTTAAGCATTAAACATAAATAACTTCTAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|3176973|gb|AAC18942.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3176973|gb|AAC18942.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1054-1429, gnl|bosTau2|chr9 (27810489-27810126)
               

               
               1054-1429, gnl|Hg17|chr9 (79570846-79571209)
               

               
               1054-1429, gnl|Mm7|chr19 (14149197-14148840)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1054-1429, gnl|bosTau2|chr9 (27810489-27810126)
               

               
               1054-1429, gnl|Hg17|chr9 (79570846-79571209)
               

               
               1054-1429, gnl|Mm7|chr19 (14149197-14148840)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

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               lin (0.436808)
               

               
               spc (0.340097)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.436808)
               

               
               spc (0.340097)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1054-1429, gnl\|bosTau2\|chr9 (27810489-27810126)
	1054-1429, gnl\|Hg17\|chr9 (79570846-79571209)
	1054-1429, gnl\|Mm7\|chr19 (14149197-14148840)

	lin (0.436808)
	spc (0.340097)
	cbe (0.239234)
	fcc (0.197785)
	gul (0.177588)
	fbs (0.175346)
	sin (0.174948)
	rec (0.17307)
	mga (0.160205)
	fco (0.157208)
	isp (0.150376)
	liv (0.146284)
	spl (0.143184)
	csk (0.140746)
	pla (0.133672)
	lyg (0.133103)
	ret (0.128733)
	thg (0.126791)
	tra (0.123092)
	pgl (0.118483)
	med (0.116252)
	ecc (0.115035)
	nbm (0.0993246)
	eje (0.0988338)
	ldo (0.0970026)