Non-Coding RNA Search

Ss1.1-rcbe27_n23.5.5

Sequence:


               
               GATGGCGGCGTCCGCGTTATTTCGCCCCTTCTCAAAGCTGCTTTCATCGGCCAGGCTCCC
AAGTGGCTCTTCAGCGCGGTCAAAGTTCTACATTCGGGAACCACCACATGGCAGCCCTGA
CTGGCTGAAAGTTGGACTGACCTTGGGCACGTCCGTTTTCTTGTGGATCTATCTCATCAA
ACAACATAAGGAAGATGTTTTAGAGTATAAAAGAAGAAATGGATTGGAATAAACTTTTGA
AATACTGATACAGTATGTTCCATGTAGTGATTATAGGAGTTCCTTTGGATTCATCAATCT
GTTGAGTTCTAAATGTGAGAGAAATATGTGAATATATGTCAAGTCAGCATTTATGTTTTG
CATAATTAAAAAAAATAATGTCTATTCTTCAGATGATGTATATTGTGATAATGTGTAGAC
TGTCAATTCTAAGGTAGATTATTAGAAGTATTTTAATGTGGAAAGTACTATCAATAATAA
GGTCAATGGTAATTGAGAACATCTTGGTAAGAAGACTTCTTAAGGATACAGGCTAAAAAA
TGACTGCTGAAATAAATCTTTCTCCTTATATCAACTTTTAATTTCTAATCACAACACTTG
TGCTTCATTGTATCAGGGTGGTAGAACTACTCCTACTCTATTATTGAAAATACAAAAGAA
CCCAAATACTCTTTTATTCTAAAGGAGAAAGTAAAAATGAATCCTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGCGGCGTCCGCGTTATTTCGCCCCTTCTCAAAGCTGCTTTCATCGGCCAGGCTCCC
AAGTGGCTCTTCAGCGCGGTCAAAGTTCTACATTCGGGAACCACCACATGGCAGCCCTGA
CTGGCTGAAAGTTGGACTGACCTTGGGCACGTCCGTTTTCTTGTGGATCTATCTCATCAA
ACAACATAAGGAAGATGTTTTAGAGTATAAAAGAAGAAATGGATTGGAATAAACTTTTGA
AATACTGATACAGTATGTTCCATGTAGTGATTATAGGAGTTCCTTTGGATTCATCAATCT
GTTGAGTTCTAAATGTGAGAGAAATATGTGAATATATGTCAAGTCAGCATTTATGTTTTG
CATAATTAAAAAAAATAATGTCTATTCTTCAGATGATGTATATTGTGATAATGTGTAGAC
TGTCAATTCTAAGGTAGATTATTAGAAGTATTTTAATGTGGAAAGTACTATCAATAATAA
GGTCAATGGTAATTGAGAACATCTTGGTAAGAAGACTTCTTAAGGATACAGGCTAAAAAA
TGACTGCTGAAATAAATCTTTCTCCTTATATCAACTTTTAATTTCTAATCACAACACTTG
TGCTTCATTGTATCAGGGTGGTAGAACTACTCCTACTCTATTATTGAAAATACAAAAGAA
CCCAAATACTCTTTTATTCTAAAGGAGAAAGTAAAAATGAATCCTATT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|346541|pir||S28250

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|346541|pir||S28250

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               35-391, gnl|bosTau2|chr12 (20605360-20605725)
               

               
               35-391, gnl|Hg17|chr14 (85959213-85959571)
               

               
               35-391, gnl|Mm7|chr13 (80762241-80762582)
               


               
               83-278, gnl|bosTau2|chr11 (35577820-35577625)
               

               
               83-278, gnl|Hg17|chr4 (140573891-140568240)
               

               
               83-278, gnl|Mm7|chr13 (80762262-80762435)
               


               
               520-708, gnl|bosTau2|chr11 (35577645-35577455)
               

               
               520-708, gnl|Hg17|chr4 (140568253-140568066)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-391, gnl|bosTau2|chr12 (20605360-20605725)
               

               
               35-391, gnl|Hg17|chr14 (85959213-85959571)
               

               
               35-391, gnl|Mm7|chr13 (80762241-80762582)
               


               
               83-278, gnl|bosTau2|chr11 (35577820-35577625)
               

               
               83-278, gnl|Hg17|chr4 (140573891-140568240)
               

               
               83-278, gnl|Mm7|chr13 (80762262-80762435)
               


               
               520-708, gnl|bosTau2|chr11 (35577645-35577455)
               

               
               520-708, gnl|Hg17|chr4 (140568253-140568066)

Expressed library(ies): 57 entry(ies)

More info

Expressed library(ies): 57 entry(ies)

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               bfe (2.99715)
               

               
               isp (2.40601)
               

               
               cbe (1.67464)
               

               
               vin (1.33023)
               

               
               cte (1.17096)
               

               
               ldo (1.06703)
               

               
               cki (0.991408)
               

               
               sme (0.91631)
               

               
               ret (0.901133)
               

               
               che (0.817884)
               

               
               ste (0.811249)
               

               
               fco (0.78604)
               

               
               sto (0.719295)
               

               
               ssp (0.677599)
               

               
               nms (0.641574)
               

               
               thg (0.633955)
               

               
               hea (0.613497)
               

               
               ski (0.586941)
               

               
               spc (0.566829)
               

               
               cmu (0.55918)
               

               
               fce (0.543183)
               

               
               lyg (0.532411)
               

               
               kid (0.518941)
               

               
               jej (0.494609)
               

               
               pgl (0.473934)
               

               
               mgp (0.461361)
               

               
               csk (0.422238)
               

               
               amn (0.417711)
               

               
               sug (0.381874)
               

               
               gul (0.355177)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               eje (0.296501)
               

               
               lin (0.291206)
               

               
               cst (0.280073)
               

               
               cly (0.241284)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 57 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (2.99715)
               

               
               isp (2.40601)
               

               
               cbe (1.67464)
               

               
               vin (1.33023)
               

               
               cte (1.17096)
               

               
               ldo (1.06703)
               

               
               cki (0.991408)
               

               
               sme (0.91631)
               

               
               ret (0.901133)
               

               
               che (0.817884)
               

               
               ste (0.811249)
               

               
               fco (0.78604)
               

               
               sto (0.719295)
               

               
               ssp (0.677599)
               

               
               nms (0.641574)
               

               
               thg (0.633955)
               

               
               hea (0.613497)
               

               
               ski (0.586941)
               

               
               spc (0.566829)
               

               
               cmu (0.55918)
               

               
               fce (0.543183)
               

               
               lyg (0.532411)
               

               
               kid (0.518941)
               

               
               jej (0.494609)
               

               
               pgl (0.473934)
               

               
               mgp (0.461361)
               

               
               csk (0.422238)
               

               
               amn (0.417711)
               

               
               sug (0.381874)
               

               
               gul (0.355177)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               eje (0.296501)
               

               
               lin (0.291206)
               

               
               cst (0.280073)
               

               
               cly (0.241284)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	35-391, gnl\|bosTau2\|chr12 (20605360-20605725)
	35-391, gnl\|Hg17\|chr14 (85959213-85959571)
	35-391, gnl\|Mm7\|chr13 (80762241-80762582)

	83-278, gnl\|bosTau2\|chr11 (35577820-35577625)
	83-278, gnl\|Hg17\|chr4 (140573891-140568240)
	83-278, gnl\|Mm7\|chr13 (80762262-80762435)

	520-708, gnl\|bosTau2\|chr11 (35577645-35577455)
	520-708, gnl\|Hg17\|chr4 (140568253-140568066)

	bfe (2.99715)
	isp (2.40601)
	cbe (1.67464)
	vin (1.33023)
	cte (1.17096)
	ldo (1.06703)
	cki (0.991408)
	sme (0.91631)
	ret (0.901133)
	che (0.817884)
	ste (0.811249)
	fco (0.78604)
	sto (0.719295)
	ssp (0.677599)
	nms (0.641574)
	thg (0.633955)
	hea (0.613497)
	ski (0.586941)
	spc (0.566829)
	cmu (0.55918)
	fce (0.543183)
	lyg (0.532411)
	kid (0.518941)
	jej (0.494609)
	pgl (0.473934)
	mgp (0.461361)
	csk (0.422238)
	amn (0.417711)
	sug (0.381874)
	gul (0.355177)
	sin (0.349895)
	rec (0.346141)
	eje (0.296501)
	lin (0.291206)
	cst (0.280073)
	cly (0.241284)
	ece (0.229305)
	mas (0.210305)
	tes (0.207814)
	nlu (0.191681)
	nep (0.183925)
	sag (0.182715)
	mgm (0.180343)
	fty (0.17584)
	fbs (0.175346)
	csp (0.161186)
	mga (0.160205)
	lun (0.150489)
	pty (0.142714)
	hlv (0.139256)
	ese (0.126502)
	tra (0.123092)
	eep (0.122564)
	eru (0.120048)
	ebs (0.118301)
	ecc (0.115035)
	nbm (0.0993246)