Ss1.1-rcbe29_l10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGTTACGGACCCTGCAGTGTACTCTCGCCATGTTCTTGTCCGCGGTCACCTTTGCCAAG AGCAAGTCAAAAACAATTCTGGTGAAAATGATGAGCCAAGCTGGAACAGGTTTTTCCTTC AACACTAAGAGAAGCCGACTGCGGGAGAAACTGACTCTGTTGCATTATGATCCAGTTGTG AAAAAAAAAGTCCTCTTTGTGGAACAGAAAAAAATACGCTCCCTCTAAACAATGGATTGA AAATGAATTCGATTTATAAATGAGAAGACTGAGGGCGGGATACTGATTCAGAAATTCTGC AGCGTGTAATAAAAGAAGAGGAAATGGCACAGAATCACTGCCTCCTGTGATTTGAAGGCC ATTGTGAAGGAAAACAATGCAGTGAAAGAAAGTTCTTCATATTAGGACATATATCATTGC ATCACATTTATTTATCTTTCTGGATATTTTTATAGCCCTTAATAAAAGTATTAAAATAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGTTACGGACCCTGCAGTGTACTCTCGCCATGTTCTTGTCCGCGGTCACCTTTGCCAAG AGCAAGTCAAAAACAATTCTGGTGAAAATGATGAGCCAAGCTGGAACAGGTTTTTCCTTC AACACTAAGAGAAGCCGACTGCGGGAGAAACTGACTCTGTTGCATTATGATCCAGTTGTG AAAAAAAAAGTCCTCTTTGTGGAACAGAAAAAAATACGCTCCCTCTAAACAATGGATTGA AAATGAATTCGATTTATAAATGAGAAGACTGAGGGCGGGATACTGATTCAGAAATTCTGC AGCGTGTAATAAAAGAAGAGGAAATGGCACAGAATCACTGCCTCCTGTGATTTGAAGGCC ATTGTGAAGGAAAACAATGCAGTGAAAGAAAGTTCTTCATATTAGGACATATATCATTGC ATCACATTTATTTATCTTTCTGGATATTTTTATAGCCCTTAATAAAAGTATTAAAATAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 212-405, - strand, RNAz p=0.881225 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 212-405, - strand, RNAz p=0.881225 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 53-498, gnl|bosTau2|chr14 (14701682-14702128) | |
| 53-498, gnl|Mm7|chr19 (33251597-33251198) | |
| 72-176, gnl|bosTau2|chr11 (52235033-52235137) | |
| 72-176, gnl|canFam2|chr17 (24890364-24890501) | |
| 72-176, gnl|danRer3|chr17 (45653867-45653736) | |
| 72-176, gnl|dasNov1|scaffold_19918 (12518-12734) | |
| 72-176, gnl|echTel1|scaffold_42743 (1287-1151) | |
| 72-176, gnl|galGal2|chr3 (23970841-23970707) | |
| 72-176, gnl|hg17|chr2 (27908925-27909062) | |
| 72-176, gnl|Hg17|chr2 (27908942-27909046) | |
| 72-176, gnl|loxAfr1|scaffold_7498 (3327-3464) | |
| 72-176, gnl|mm7|chr5 (30648879-30649017) | |
| 72-176, gnl|Mm7|chr5 (30648897-30649001) | |
| 72-176, gnl|monDom2|scaffold_1 (148325444-148325307) | |
| 72-176, gnl|oryCun1|scaffold_207704 (52622-52759) | |
| 72-176, gnl|panTro1|chr12 (28850967-28851104) | |
| 72-176, gnl|rheMac2|chr13 (27756786-27756923) | |
| 72-176, gnl|rn3|chr6 (24878881-24878746) | |
| 72-176, gnl|tetNig1|chr10 (633264-633397) | |
| 178-478, gnl|bosTau2|chr11 (52240069-52240369) | |
| 178-478, gnl|Hg17|chr2 (27913950-27914251) | |
| 178-478, gnl|Mm7|chr5 (30654892-30655153) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 53-498, gnl|bosTau2|chr14 (14701682-14702128) | |
| 53-498, gnl|Mm7|chr19 (33251597-33251198) | |
| 72-176, gnl|bosTau2|chr11 (52235033-52235137) | |
| 72-176, gnl|canFam2|chr17 (24890364-24890501) | |
| 72-176, gnl|danRer3|chr17 (45653867-45653736) | |
| 72-176, gnl|dasNov1|scaffold_19918 (12518-12734) | |
| 72-176, gnl|echTel1|scaffold_42743 (1287-1151) | |
| 72-176, gnl|galGal2|chr3 (23970841-23970707) | |
| 72-176, gnl|hg17|chr2 (27908925-27909062) | |
| 72-176, gnl|Hg17|chr2 (27908942-27909046) | |
| 72-176, gnl|loxAfr1|scaffold_7498 (3327-3464) | |
| 72-176, gnl|mm7|chr5 (30648879-30649017) | |
| 72-176, gnl|Mm7|chr5 (30648897-30649001) | |
| 72-176, gnl|monDom2|scaffold_1 (148325444-148325307) | |
| 72-176, gnl|oryCun1|scaffold_207704 (52622-52759) | |
| 72-176, gnl|panTro1|chr12 (28850967-28851104) | |
| 72-176, gnl|rheMac2|chr13 (27756786-27756923) | |
| 72-176, gnl|rn3|chr6 (24878881-24878746) | |
| 72-176, gnl|tetNig1|chr10 (633264-633397) | |
| 178-478, gnl|bosTau2|chr11 (52240069-52240369) | |
| 178-478, gnl|Hg17|chr2 (27913950-27914251) | |
| 178-478, gnl|Mm7|chr5 (30654892-30655153) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| cbe (1.43541) | |
| spc (0.566829) | |
| sto (0.539471) | |
| rec (0.519211) | |
| ton (0.351) | |
| vin (0.332557) | |
| sme (0.305437) | |
| bfe (0.299715) | |
| hlv (0.278513) | |
| nmm (0.265604) | |
| jej (0.197844) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| mga (0.160205) | |
| isp (0.150376) | |
| fat (0.147427) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eru (0.120048) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (1.43541) | |
| spc (0.566829) | |
| sto (0.539471) | |
| rec (0.519211) | |
| ton (0.351) | |
| vin (0.332557) | |
| sme (0.305437) | |
| bfe (0.299715) | |
| hlv (0.278513) | |
| nmm (0.265604) | |
| jej (0.197844) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| mga (0.160205) | |
| isp (0.150376) | |
| fat (0.147427) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eru (0.120048) |